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[180025_at]

Description T02G5.2 /REP_DB=WormBase Gene ID /WP=CE04854 /TR=Q22108 /GB=AAA82405.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 46      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 33
(3)
A 		30.5
(2.5)
A 		12.9
(-1.2)
A 		4.4
(-3)
A 		29
B 37.4
(3)
P 		2.1
(-3)
A 		2.4
(-2.9)
A 		16.1
(-0.6)
A 		35
C 48.3
(3)
P 		19.3
(-0.9)
A 		6.6
(-2.6)
A 		3.8
(-3)
A 		45
avr 39.6
(3) 		17.3
(-1.1) 		7.3
(-3) 		8.1
(-2.9) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 19.5
(0)
A 		37.7
(3)
P 		35.8
(2.7)
P 		23.7
(0.7)
A 		0.9
(-3)
A 		25.3
(1)
A 		37
B 42.1
(3)
P 		42.2
(3)
M 		14.4
(-1.2)
A 		2.3
(-3)
A 		14.6
(-1.2)
A 		21.4
(-0.1)
A 		40
C 39.7
(3)
A 		22
(0.1)
A 		10.4
(-1.8)
A 		3.3
(-3)
A 		19.8
(-0.3)
A 		21.3
(-0)
P 		36
avr 33.8
(3) 		34
(3) 		20.2
(-0.4) 		9.8
(-3) 		11.8
(-2.5) 		22.7
(0.2) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 12
(3)
A 		6.6
(0.2)
A 		3.4
(-1.5)
A 		0.6
(-3)
A 		11
B 11.9
(3)
P 		0.5
(-3)
A 		0.6
(-2.9)
A 		3.4
(-1.5)
A 		11
C 16
(3)
P 		5.5
(-1.1)
A 		2.3
(-2.3)
A 		0.6
(-3)
A 		15
avr 13.3
(3) 		4.2
(-1.6) 		2.1
(-2.7) 		1.5
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.6
(-1.5)
A 		13.4
(3)
P 		7.8
(0.4)
P 		6
(-0.4)
A 		0.3
(-3)
A 		6.2
(-0.3)
A 		13
B 14.7
(3)
P 		14.1
(2.7)
M 		3.5
(-1.8)
A 		0.6
(-3)
A 		5.9
(-0.7)
A 		8
(0.1)
A 		14
C 14.7
(3)
A 		6.7
(-0.4)
A 		2.6
(-2.2)
A 		0.7
(-3)
A 		6.4
(-0.6)
A 		7.1
(-0.3)
P 		14
avr 11
(2.7) 		11.4
(3) 		4.6
(-1.5) 		2.4
(-3) 		4.2
(-1.8) 		7.1
(0.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180025_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4876
Sequence Type Exemplar sequence
Representative Public ID T02G5.2 NCBI
Target Description T02G5.2 /REP_DB=WormBase Gene ID /WP=CE04854 /TR=Q22108 /GB=AAA82405.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063062(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063062 NCBI Caenorhabditis elegans T02G5.2 (T02G5.2) mRNA, complete cds. 11/11 None
SNAP00000014291 ENSEMBL cdna:SNAP chromosome:CEL140:II:7095425:7096263:1 11/11 None
GENEFINDER00000014304 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7094129:7096263:1 11/11 None
T02G5.2 ENSEMBL cdna:known chromosome:CEL140:II:7095425:7095843:1 gene:T02G5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7095420-7095839(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02G5.2
Entrez Gene 187990 Entrez gene
SwissProt Q22108 EMBL-EBI
WormBase CE04854 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE66023 Hypothetical protein CBG11217 [Caenorhabditis briggsae] 1.0E-109
blast CAE66023 Hypothetical protein CBG11217 [Caenorhabditis briggsae] 1.0E-108
blast NP_495462 T02G5.3 [Caenorhabditis elegans] gb|AAA82404.1| Hypothetical protein T02G5.3 [Caenorhabditis elegans] 1.0E-79
blast NP_495463 T02G5.2 [Caenorhabditis elegans] gb|AAA82405.1| Hypothetical protein T02G5.2 [Caenorhabditis elegans] 3.0E-65
blast NP_495463 T02G5.2 [Caenorhabditis elegans] gb|AAA82405.1| Hypothetical protein T02G5.2 [Caenorhabditis elegans] 1.0E-64
blast NP_495463 T02G5.2 [Caenorhabditis elegans] gb|AAA82405.1| Hypothetical protein T02G5.2 [Caenorhabditis elegans] 1.0E-63
blast CAE66023 Hypothetical protein CBG11217 [Caenorhabditis briggsae] 5.0E-48
blast XP_581406 PREDICTED: similar to KIAA1799 protein, partial [Bos taurus] 1.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0022
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0022
Sequence
Target Sequence 
>C. ELEGANS:180025_AT
gtacgtggatgtatgactgtatatccaaaagttcagtgtatttcttataagattgatgtt
gataagccaactgtttgtgagctgacactttgtttagcacctaatagcgatgttccagct
gatagattcagtaatgatctatttctagttgtttataataatgaacagaaattagttggt
ttaacacgtcatgtacttgaagaaagaaagtacagtactggaatgatgactgttaatgaa
ggagatgaagtaatgattgttggaatgggaacaactacaaatagaaaaagatcaacaact
gaaagagttccattgattgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACGTGGATGTATGACTGTATATC 692 457 28 Antisense
ATATCCAAAAGTTCAGTGTATTTCT 420 21 48 Antisense
AAGCCAACTGTTTGTGAGCTGACAC 269 149 91 Antisense
GAGCTGACACTTTGTTTAGCACCTA 536 387 106 Antisense
TAGCACCTAATAGCGATGTTCCAGC 115 653 122 Antisense
GATGTTCCAGCTGATAGATTCAGTA 38 411 136 Antisense
GATTCAGTAATGATCTATTTCTAGT 475 431 152 Antisense
ATGATCTATTTCTAGTTGTTTATAA 310 47 161 Antisense
GTTGGTTTAACACGTCATGTACTTG 179 437 202 Antisense
GTACTGGAATGATGACTGTTAATGA 707 457 242 Antisense
AACTGAAAGAGTTCCATTGATTGAA 207 143 324 Antisense
Sequence Source Affymetrix Proprietary Database