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[180023_at]

Description T05A7.3 /REP_DB=WormBase Gene ID /WP=CE04889 /TR=Q22206 /GB=AAA81118.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 56      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 33.2
(-1.1)
A 		54.3
(3)
A 		28.3
(-2)
A 		23.3
(-3)
A 		31
B 16.1
(-3)
A 		39.3
(0.6)
A 		54.3
(3)
A 		27.8
(-1.2)
A 		38
C 31.4
(-0.9)
A 		14.9
(-3)
A 		61.3
(3)
P 		31
(-0.9)
P 		46
avr 26.9
(-3) 		36.2
(-0.4) 		48
(3) 		27.4
(-2.9) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 68
(3)
P 		32.9
(-1.8)
A 		43.5
(-0.3)
A 		24.1
(-3)
A 		28.8
(-2.4)
P 		58
(1.6)
P 		44
B 26.2
(-2.3)
A 		40.5
(0.7)
P 		32.9
(-0.9)
A 		37
(-0.1)
A 		23.1
(-3)
M 		51.5
(3)
P 		28
C 47.6
(1.9)
A 		46.8
(1.7)
M 		31.2
(-3)
A 		48.7
(2.3)
A 		51.2
(3)
P 		48.2
(2.1)
P 		20
avr 47.3
(1.3) 		40.1
(-1.1) 		35.9
(-2.5) 		36.6
(-2.3) 		34.4
(-3) 		52.6
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 12.1
(3)
A 		11.8
(2.8)
A 		7.4
(-0.2)
A 		3.4
(-3)
A 		9
B 5.1
(-3)
A 		9.7
(0.7)
A 		12.6
(3)
A 		5.9
(-2.4)
A 		8
C 10.4
(-0.9)
A 		4.3
(-3)
A 		21.4
(3)
P 		5.2
(-2.7)
P 		17
avr 9.2
(-0.1) 		8.6
(-0.5) 		13.8
(3) 		4.8
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 12.5
(1.8)
P 		11.7
(1.2)
A 		9.5
(-0.5)
A 		6.1
(-3)
A 		8.7
(-1.1)
P 		14.1
(3)
P 		8
B 9.1
(-2.4)
A 		13.5
(-0.1)
P 		8
(-3)
A 		9.8
(-2)
A 		9.4
(-2.3)
M 		19.2
(3)
P 		11
C 17.7
(3)
A 		14.3
(0.9)
M 		7.9
(-3)
A 		9.8
(-1.8)
A 		16.6
(2.3)
P 		16.1
(2)
P 		10
avr 13.1
(0.5) 		13.2
(0.5) 		8.5
(-3) 		8.6
(-2.9) 		11.6
(-0.7) 		16.5
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180023_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5934
Sequence Type Exemplar sequence
Representative Public ID T05A7.3 NCBI
Target Description T05A7.3 /REP_DB=WormBase Gene ID /WP=CE04889 /TR=Q22206 /GB=AAA81118.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062426(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062426 NCBI Caenorhabditis elegans T05A7.3 (T05A7.3) mRNA, complete cds. 11/11 None
SNAP00000043918 ENSEMBL cdna:SNAP chromosome:CEL140:II:4675768:4676235:1 11/11 None
GENEFINDER00000043923 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4674460:4677658:1 10/11 None
T05A7.3 ENSEMBL cdna:known chromosome:CEL140:II:4675768:4676235:1 gene:T05A7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4675766-4676234(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05A7.3
Entrez Gene 188083 Entrez gene
SwissProt Q22206 EMBL-EBI
WormBase CE04889 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494826 T05A7.2 [Caenorhabditis elegans] gb|AAA81117.1| Hypothetical protein T05A7.2 [Caenorhabditis elegans] 3.0E-89
blast NP_494827 T05A7.3 [Caenorhabditis elegans] gb|AAA81118.1| Hypothetical protein T05A7.3 [Caenorhabditis elegans] 1.0E-60
blast CAE67851 Hypothetical protein CBG13439 [Caenorhabditis briggsae] 4.0E-58
blast NP_494827 T05A7.3 [Caenorhabditis elegans] gb|AAA81118.1| Hypothetical protein T05A7.3 [Caenorhabditis elegans] 1.0E-40
blast CAE62950 Hypothetical protein CBG07163 [Caenorhabditis briggsae] 3.0E-14
blast NP_498023 C-type LECtin family member (clec-6) [Caenorhabditis elegans] gb|AAK68224.1| C-type lectin protein 6 [Caenorhabditis elegans] 3.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR000859 EMBL-EBI CUB 3.9E-10
Pfam IPR001304 EMBL-EBI C-type lectin 1.2E-6
Sequence
Target Sequence 
>C. ELEGANS:180023_AT
gtgcagcgactcagtatttcctgtgtaaacgtccaactggtataacctgtggaccaccaa
cgccagcccctcctgtgattatcacaccagcgccaacgaatccatcaggatgtaactcaa
ctgctctttttgatgccggaacaattacttcgcccaattatcctagtacttttccaatcc
cctcatattgtgtttataagttgacaactcttggtgcataccgtattggcatatatttct
cggatctctccatgtcccaaaattcatacgttctagtgtatgactcaaatggatcactga
ttgtttctctgacgcgatcttcatcgttgggaaactattacagcagctccaacacaatga
ctgtctcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCAGCGACTCAGTATTTCCTGTG 547 479 53 Antisense
AGGATGTAACTCAACTGCTCTTTTT 142 57 159 Antisense
TGATGCCGGAACAATTACTTCGCCC 614 565 183 Antisense
TCGCCCAATTATCCTAGTACTTTTC 152 599 202 Antisense
TTTTCCAATCCCCTCATATTGTGTT 409 677 222 Antisense
GTTGACAACTCTTGGTGCATACCGT 486 437 252 Antisense
TGGCATATATTTCTCGGATCTCTCC 27 547 279 Antisense
ATCTCTCCATGTCCCAAAATTCATA 344 33 296 Antisense
GGATCACTGATTGTTTCTCTGACGC 299 511 343 Antisense
TCTCTGACGCGATCTTCATCGTTGG 125 611 358 Antisense
GCTCCAACACAATGACTGTCTCTTT 672 297 398 Antisense
Sequence Source Affymetrix Proprietary Database