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[180022_s_at]

Description C37A2.8 /REP_DB=WormBase Gene ID /WP=CE08617 /TR=O01506 /GB=AAB52452.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 75      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 85      6grp_total > 76      4grp_total > 30      6grp_highest_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 520
1 2 3 4 range
A 984
(3)
P 		477.2
(-3)
P 		474.2
(-3)
P 		660.6
(-0.8)
P 		510
B 597.4
(-0.2)
P 		738.6
(2.7)
P 		464.2
(-3)
P 		752.8
(3)
P 		289
C 774.3
(3)
P 		595.5
(-3)
P 		647.6
(-1.3)
P 		665.1
(-0.7)
P 		179
avr 785.2
(3) 		603.8
(-1.2) 		528.7
(-3) 		692.8
(0.8) 		257

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 587
1 2 3 4 5 6 range
A 763
(-2.2)
P 		861.3
(-0.6)
P 		943.1
(0.8)
P 		1054.9
(2.6)
P 		715.8
(-3)
P 		1079
(3)
P 		363
B 869.6
(-0)
P 		578.2
(-3)
P 		616.3
(-2.6)
P 		752.7
(-1.2)
P 		828
(-0.4)
P 		1165.3
(3)
P 		587
C 683.9
(-1.1)
P 		587.4
(-3)
P 		856.1
(2.3)
P 		830.5
(1.8)
P 		701
(-0.7)
P 		890.3
(3)
P 		303
avr 772.2
(-1.4) 		675.6
(-3) 		805.2
(-0.9) 		879.4
(0.3) 		748.3
(-1.8) 		1044.9
(3) 		369
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 358.3
(3)
P 		103.6
(-2.8)
P 		124
(-2.4)
P 		96.7
(-3)
P 		262
B 190.5
(3)
P 		182.4
(2.4)
P 		107.6
(-3)
P 		160.4
(0.8)
P 		83
C 256.3
(3)
P 		171.2
(-0.5)
P 		225.7
(1.7)
P 		112.1
(-3)
P 		144
avr 268.4
(3) 		152.4
(-1.8) 		152.4
(-1.8) 		123.1
(-3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 294
1 2 3 4 5 6 range
A 140.7
(-3)
P 		306.3
(3)
P 		205.4
(-0.7)
P 		267.5
(1.6)
P 		216
(-0.3)
P 		262.7
(1.4)
P 		166
B 302.6
(0.2)
P 		192.5
(-2.1)
P 		149.7
(-3)
P 		199.4
(-2)
P 		336.4
(0.9)
P 		434.5
(3)
P 		285
C 253.5
(1)
P 		179.2
(-2.4)
P 		217.9
(-0.7)
P 		167
(-3)
P 		226.8
(-0.3)
P 		298
(3)
P 		131
avr 232.3
(-1.2) 		226
(-1.5) 		191
(-3) 		211.3
(-2.1) 		259.7
(-0.1) 		331.7
(3) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180022_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1522
Sequence Type Exemplar sequence
Representative Public ID C37A2.8 NCBI
Target Description C37A2.8 /REP_DB=WormBase Gene ID /WP=CE08617 /TR=O01506 /GB=AAB52452.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059545(11), NM_059546(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059545 NCBI Caenorhabditis elegans C37A2.8a (C37A2.8) mRNA, complete cds. 11/11 None
NM_059546 NCBI Caenorhabditis elegans C37A2.8b (C37A2.8) mRNA, complete cds. 11/11 None
SNAP00000014183 ENSEMBL cdna:SNAP chromosome:CEL140:I:6806404:6807711:-1 11/11 None
GENEFINDER00000014187 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6806404:6807711:-1 11/11 None
C37A2.8a ENSEMBL cdna:known chromosome:CEL140:I:6806404:6807762:-1 gene:C37A2.8 11/11 None
C37A2.8b ENSEMBL cdna:known chromosome:CEL140:I:6806406:6807742:-1 gene:C37A2.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6806332-6807640(-) 100.0 100.0
Public Domain and Genome References
Ensembl C37A2.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52452 Hypothetical protein C37A2.8a [Caenorhabditis elegans] ref|NP_491946.1| C37A2.8a [Caenorhabditis elegans] 1.0E-149
blast CAE67311 Hypothetical protein CBG12766 [Caenorhabditis briggsae] 1.0E-100
blast AAL02460 Hypothetical protein C37A2.8b [Caenorhabditis elegans] ref|NP_491947.1| C37A2.8b [Caenorhabditis elegans] 7.0E-46
Sequence
Target Sequence 
>C. ELEGANS:180022_S_AT
gcaaatctagatgatactcccgtagagtttctagtagattttggcacaaagaagagaaga
attgaagaggagagagcgtgggaacgcgagagatacagagaacaagaagaagcagcgccg
attggatttggaagagctccaattccagaacattatcaccatagtgaagaacaacgtgtt
tatggaacatcacatatgcggctatcacttaatgaaaataaacgaaaggaagaaattgaa
aaacttctcgaaatgtcgaaaaagacagatatggataaggcgaagaagaaggaaactgag
aaacatagagatattttaagaagagaaaaactgaacaaattaagagcgaaacatggactc
gaacttcttcctgaaatagttgaaccagttgctgtccctgcatcacaaatagatttgaat
tcgattcctttgcctggacagaaagagacaccggaagaaaggcatgctcgtctaatgaaa
tctgatcgtgaatgggatcgaggcaaagggcactacaccacgtggatcgaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAATCTAGATGATACTCCCGTAG 88 319 436 Antisense
GAAGCAGCGCCGATTGGATTTGGAA 448 341 544 Antisense
GAGCTCCAATTCCAGAACATTATCA 433 387 569 Antisense
GGAACATCACATATGCGGCTATCAC 519 529 619 Antisense
ATAGTTGAACCAGTTGCTGTCCCTG 53 23 811 Antisense
TTGCTGTCCCTGCATCACAAATAGA 219 701 824 Antisense
AATTCGATTCCTTTGCCTGGACAGA 495 175 853 Antisense
GACACCGGAAGAAAGGCATGCTCGT 666 365 882 Antisense
GGCATGCTCGTCTAATGAAATCTGA 567 535 896 Antisense
GGATCGAGGCAAAGGGCACTACACC 642 511 930 Antisense
GGCACTACACCACGTGGATCGAAAA 487 535 944 Antisense
Sequence Source Affymetrix Proprietary Database