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[180021_at]

Description B0041.1 /REP_DB=WormBase Gene ID /WP=CE07666 /TR=O02060 /GB=AAC24250.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 7.7
(-3)
A 		53.7
(3)
A 		9.5
(-2.8)
A 		35.2
(0.6)
A 		46
B 33.2
(0.2)
A 		15.6
(-2.2)
A 		9.7
(-3)
A 		53.3
(3)
A 		44
C 27
(-1.4)
A 		8.9
(-3)
A 		21
(-1.9)
A 		75.1
(3)
P 		66
avr 22.6
(-1.7) 		26.1
(-1.1) 		13.4
(-3) 		54.5
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 9.5
(-3)
A 		58.2
(3)
A 		48.6
(1.8)
A 		20.4
(-1.7)
A 		11.5
(-2.8)
A 		41.6
(1)
A 		49
B 10.3
(-3)
A 		24.9
(-0.1)
A 		25.9
(0.1)
A 		26.9
(0.3)
A 		40.1
(3)
A 		33
(1.6)
A 		30
C 7
(-2.7)
A 		20.9
(-0.8)
A 		10.7
(-2.2)
A 		10.7
(-2.2)
A 		49.2
(3)
A 		4.6
(-3)
A 		45
avr 8.9
(-3) 		34.7
(3) 		28.4
(1.5) 		19.3
(-0.6) 		33.6
(2.7) 		26.4
(1.1) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.8
(-2.8)
A 		11.7
(3)
A 		2.5
(-3)
A 		5.2
(-1.2)
A 		9
B 10.6
(2.5)
A 		3.9
(-1.9)
A 		2.2
(-3)
A 		11.4
(3)
A 		9
C 9
(0.8)
A 		2.6
(-3)
A 		7.3
(-0.2)
A 		12.7
(3)
P 		10
avr 7.5
(0.6) 		6.1
(-0.8) 		4
(-3) 		9.8
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.8
(-3)
A 		20.7
(3)
A 		10.6
(-0.2)
A 		5.2
(-1.9)
A 		3.5
(-2.5)
A 		10.1
(-0.4)
A 		19
B 3.6
(-3)
A 		8.3
(-0.8)
A 		6.3
(-1.7)
A 		7.1
(-1.3)
A 		16.3
(3)
A 		12.3
(1.1)
A 		13
C 2.6
(-2.6)
A 		6.4
(-1)
A 		2.7
(-2.5)
A 		2.2
(-2.7)
A 		15.9
(3)
A 		1.6
(-3)
A 		14
avr 2.7
(-3) 		11.8
(2.9) 		6.5
(-0.5) 		4.8
(-1.6) 		11.9
(3) 		8
(0.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180021_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2356
Sequence Type Exemplar sequence
Representative Public ID B0041.1 NCBI
Target Description B0041.1 /REP_DB=WormBase Gene ID /WP=CE07666 /TR=O02060 /GB=AAC24250.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059021(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059021 NCBI Caenorhabditis elegans B0041.1 (B0041.1) mRNA, complete cds. 11/11 None
B0041.1 ENSEMBL cdna:known chromosome:CEL140:I:4664872:4665757:1 gene:B0041.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016539 5/11 Cross Hyb Matching Probes None
GENEFINDER00000016542 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4664871-4665757(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0041.1
Entrez Gene 181822 Entrez gene
SwissProt O02060 EMBL-EBI
WormBase CE07666 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24250 Hypothetical protein B0041.1 [Caenorhabditis elegans] ref|NP_491422.1| B0041.1 [Caenorhabditis elegans] 4.0E-99
Sequence
Target Sequence 
>C. ELEGANS:180021_AT
tggaactctatgtctgatggggcaggtctaaaggctgatcaattgttgaaaaagttccat
agcaaaggacaaccatttgctactatgagtgaggcgactaaattaaaattggtagcagaa
tggtattatttcaatccggctcaaacgaaaattgcgtttattaagaatcactgtggtggt
gaaagaaaagatatagttctcctcggtccttgggaaacattcaaagacaatcattttgtg
tacggagaaccaggaaccaaatgcccaaaaagcgtttttgtttttgattctggcagattc
gaaattgcatgttacttcatactacactgggcctccatcatatttaatcagagtttgtcc
agtattaagttgagttatcattttggaatgaacagctttatagattcgctgctttcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAACTCTATGTCTGATGGGGCAG 508 547 40 Antisense
GATGGGGCAGGTCTAAAGGCTGATC 571 405 55 Antisense
GGACAACCATTTGCTACTATGAGTG 52 527 106 Antisense
GGTATTATTTCAATCCGGCTCAAAC 496 505 161 Antisense
AAAAGATATAGTTCTCCTCGGTCCT 9 133 225 Antisense
TTCTCCTCGGTCCTTGGGAAACATT 505 693 236 Antisense
GGAGAACCAGGAACCAAATGCCCAA 587 517 283 Antisense
GCGTTTTTGTTTTTGATTCTGGCAG 123 291 311 Antisense
GCATGTTACTTCATACTACACTGGG 258 311 346 Antisense
TACACTGGGCCTCCATCATATTTAA 624 641 362 Antisense
GCTTTATAGATTCGCTGCTTTCAAT 191 305 434 Antisense
Sequence Source Affymetrix Proprietary Database