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[180020_at]

Description T05E11.7 /REP_DB=WormBase Gene ID /WP=CE06366 /TR=Q21597 /GB=CAA92979.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 01      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 1
(-3)
A 		1.8
(-2.8)
A 		1.4
(-2.9)
A 		29.7
(3)
A 		29
B 1.1
(-2.7)
A 		0.9
(-3)
A 		4.4
(3)
A 		4.3
(2.8)
A 		4
C 2.2
(-2.9)
A 		3
(-2.8)
A 		1.8
(-3)
A 		43.3
(3)
A 		42
avr 1.4
(-3) 		1.9
(-2.9) 		2.5
(-2.7) 		25.8
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.2
(-2)
A 		1.3
(-3)
A 		12.6
(3)
A 		1.3
(-3)
A 		2.2
(-2.5)
A 		7.5
(0.3)
A 		11
B 2.2
(-2.4)
A 		1.2
(-2.8)
A 		3.2
(-1.9)
A 		14.2
(3)
A 		2.5
(-2.2)
A 		0.8
(-3)
A 		13
C 1.1
(-3)
A 		12.6
(2.3)
A 		14
(3)
A 		5.3
(-1)
A 		3.9
(-1.7)
A 		2.3
(-2.4)
A 		13
avr 2.2
(-3) 		5
(-0.8) 		9.9
(3) 		6.9
(0.7) 		2.9
(-2.5) 		3.5
(-2) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.4
(-3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		4.4
(3)
A 		4
B 0.3
(-2.3)
A 		0.2
(-3)
A 		1
(3)
A 		0.9
(2.3)
A 		1
C 0.7
(-2.9)
A 		0.9
(-2.7)
A 		0.6
(-3)
A 		7.3
(3)
A 		7
avr 0.5
(-3) 		0.5
(-3) 		0.7
(-2.7) 		4.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.6
(-2.3)
A 		0.5
(-2.5)
A 		2.7
(3)
A 		0.3
(-3)
A 		0.7
(-2)
A 		1.8
(0.7)
A 		2
B 0.8
(-2.1)
A 		0.4
(-2.8)
A 		0.8
(-2.1)
A 		3.8
(3)
A 		1
(-1.8)
A 		0.3
(-3)
A 		4
C 0.4
(-3)
A 		3.8
(3)
A 		3.6
(2.6)
A 		1.1
(-1.8)
A 		1.3
(-1.4)
A 		0.8
(-2.3)
A 		3
avr 0.6
(-3) 		1.6
(0.3) 		2.4
(3) 		1.7
(0.7) 		1
(-1.7) 		1
(-1.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180020_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9637
Sequence Type Exemplar sequence
Representative Public ID T05E11.7 NCBI
Target Description T05E11.7 /REP_DB=WormBase Gene ID /WP=CE06366 /TR=Q21597 /GB=CAA92979.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069673(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069673 NCBI Caenorhabditis elegans T05E11.7 (T05E11.7) mRNA, complete cds. 11/11 None
SNAP00000031857 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11103350:11104575:-1 10/11 None
GENEFINDER00000031872 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11103421:11104234:-1 9/11 None
T05E11.7 ENSEMBL cdna:known chromosome:CEL140:IV:11103227:11103822:-1 gene:T05E11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11103232-11103828(-) 77.41 100.0
Public Domain and Genome References
Gene Title
Ensembl T05E11.7
Entrez Gene 188132 Entrez gene
SwissProt Q21597 EMBL-EBI
WormBase CE06366 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92979 Hypothetical protein T05E11.7 [Caenorhabditis elegans] emb|CAA92754.1| Hypothetical protein T05E11.7 [Caenorhabditis elegans] ref|NP_502074.1| T05E11.7 [Caenorhabditis elegans] 2.0E-40
blast CAB00885 Hypothetical protein ZC376.8 [Caenorhabditis elegans] ref|NP_506512.2| ZC376.8 [Caenorhabditis elegans] 4.0E-39
blast AAB52360 Hypothetical protein F47B3.5 [Caenorhabditis elegans] ref|NP_491273.1| F47B3.5 [Caenorhabditis elegans] 5.0E-38
blast CAB00885 Hypothetical protein ZC376.8 [Caenorhabditis elegans] ref|NP_506512.2| ZC376.8 [Caenorhabditis elegans] 1.0E-37
blast CAE65738 Hypothetical protein CBG10823 [Caenorhabditis briggsae] 1.0E-36
blast AAB52359 Hypothetical protein F47B3.4 [Caenorhabditis elegans] ref|NP_491272.1| F47B3.4 [Caenorhabditis elegans] 6.0E-35
blast CAE65738 Hypothetical protein CBG10823 [Caenorhabditis briggsae] 1.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 1.2E-12
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 1.2E-12
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 8.1E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000031857 1 20-39
GENEFINDER00000031872 1 15-34
Sequence
Target Sequence 
>C. ELEGANS:180020_AT
atgagccagcaaaatcgaaaatcgaaaaagagtgagaatgaaaagtcgaaaaagggaagt
agcaagaaatcggaaaagaaggaaaaaactgaagagaagaaatcgaaaaaggatgaaccg
aaaaaagatgaggaagatgcgaagaagggagatgttaaaggaaaggatgcattcaagaaa
ccagtggatgaagctgcagttgctgcgaagaaggaccctaactatcagacactctgtgga
cttaacaatgaccttttcgggcctgacaagaacccaaagaaacaattcaaagctccaaca
aaagtggagaaagctgatgtgaaggacccgcaatacgagacattgaacggacttggtgaa
gatttgttcaaggacgaaaagaaggaagatgagggaaagaagaaagaattcaagcaacca
gaaaaagttcagaaggcagatgcaaaagatccacagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGCCAGCAAAATCGAAAATCGA 33 43 13 Antisense
ACCAGTGGATGAAGCTGCAGTTGCT 493 85 192 Antisense
GCAGTTGCTGCGAAGAAGGACCCTA 274 313 208 Antisense
GAAGAAGGACCCTAACTATCAGACA 494 339 219 Antisense
GACACTCTGTGGACTTAACAATGAC 14 367 240 Antisense
TAACAATGACCTTTTCGGGCCTGAC 419 639 255 Antisense
TTTCGGGCCTGACAAGAACCCAAAG 621 653 267 Antisense
GAAAGCTGATGTGAAGGACCCGCAA 176 359 321 Antisense
TGAAGGACCCGCAATACGAGACATT 484 575 332 Antisense
ACGAGACATTGAACGGACTTGGTGA 647 91 347 Antisense
AAGGCAGATGCAAAAGATCCACAGT 229 161 445 Antisense
Sequence Source Affymetrix Proprietary Database