[Home] | [Total List]

[180019_at]

Description F55C9.10 /REP_DB=WormBase Gene ID /WP=CE18742 /TR=Q9XUZ3 /GB=CAB04469.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 36      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 30.5
(3)
A 		20.8
(0.7)
A 		5
(-3)
A 		30.1
(2.9)
A 		26
B 13.7
(1.5)
A 		16.7
(3)
A 		5
(-3)
A 		8.8
(-1.1)
A 		12
C 4.1
(-2.9)
A 		9.5
(3)
A 		4
(-3)
A 		4.6
(-2.3)
A 		6
avr 16.1
(3) 		15.7
(2.8) 		4.7
(-3) 		14.5
(2.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 51
(3)
A 		4.3
(-3)
A 		17.9
(-1.3)
A 		31.3
(0.5)
A 		5.4
(-2.9)
A 		30.6
(0.4)
A 		47
B 40.6
(3)
A 		12
(-1.5)
A 		6.9
(-2.3)
A 		13.9
(-1.2)
A 		2.3
(-3)
A 		39.6
(2.8)
A 		38
C 18.3
(0.5)
A 		7.4
(-1.9)
A 		29.8
(3)
A 		16.8
(0.1)
A 		2.5
(-3)
A 		19.5
(0.7)
A 		27
avr 36.6
(3) 		7.9
(-2.2) 		18.2
(-0.3) 		20.7
(0.1) 		3.4
(-3) 		29.9
(1.8) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 11.1
(3)
A 		4.5
(-1)
A 		1.3
(-3)
A 		4.4
(-1.1)
A 		10
B 4.4
(3)
A 		4.1
(2.4)
A 		1.2
(-3)
A 		1.9
(-1.7)
A 		3
C 1.3
(-1.4)
A 		2.7
(3)
A 		1.4
(-1.1)
A 		0.8
(-3)
A 		2
avr 5.6
(3) 		3.8
(0.5) 		1.3
(-3) 		2.4
(-1.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 9.4
(3)
A 		1.5
(-3)
A 		3.9
(-1.2)
A 		7.9
(1.9)
A 		1.6
(-2.9)
A 		7.5
(1.6)
A 		8
B 14.1
(2.7)
A 		4
(-1.7)
A 		1.7
(-2.7)
A 		3.7
(-1.8)
A 		0.9
(-3)
A 		14.8
(3)
A 		14
C 6.8
(2.3)
A 		2.3
(-1.7)
A 		7.6
(3)
A 		3.4
(-0.7)
A 		0.8
(-3)
A 		6.5
(2)
A 		7
avr 10.1
(3) 		2.6
(-2) 		4.4
(-0.8) 		5
(-0.4) 		1.1
(-3) 		9.6
(2.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180019_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13563
Sequence Type Exemplar sequence
Representative Public ID F55C9.10 NCBI
Target Description F55C9.10 /REP_DB=WormBase Gene ID /WP=CE18742 /TR=Q9XUZ3 /GB=CAB04469.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075358(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075358 NCBI Caenorhabditis elegans F55C9.10 (F55C9.10) mRNA, complete cds. 11/11 None
SNAP00000026278 ENSEMBL cdna:SNAP chromosome:CEL140:V:19306699:19307645:1 11/11 None
GENEFINDER00000026288 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19306699:19307645:1 11/11 None
F55C9.10 ENSEMBL cdna:known chromosome:CEL140:V:19306699:19307645:1 gene:F55C9.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19306698-19307645(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55C9.10
Entrez Gene 186298 Entrez gene
SwissProt Q9XUZ3 EMBL-EBI
WormBase CE18742 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04469 Hypothetical protein F55C9.10 [Caenorhabditis elegans] ref|NP_507759.1| F55C9.10 [Caenorhabditis elegans] 1.0E-165
blast CAB04471 Hypothetical protein F55C9.8 [Caenorhabditis elegans] ref|NP_507757.1| F55C9.8 [Caenorhabditis elegans] 2.0E-54
blast CAB03963 Hypothetical protein C43D7.2 [Caenorhabditis elegans] ref|NP_507766.1| C43D7.2 [Caenorhabditis elegans] 3.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.7E-5
Sequence
Target Sequence 
>C. ELEGANS:180019_AT
ttattccttggaatcccctggaagttgatctgagaacatttctggatcattctcagtgtg
tactccatacggataaagttgagtattttatggtcagcagtgatgattacgattggaagt
caatttatgaagctcttaacgacttggaaattcctagaactaccctagaatgtgtctcta
caaatgtttggctccacaagcttttcaataaggtttccagtggctcccttgaaatcactc
ttccggatttcaaagggtaccgctcaatgttgagctcacactgccagaatttgactgttg
cctccgggctcactgatcttctgagtgtcaactgtgcacacttagaagtgatgctgcgca
tgagttcaaatgaaataaacatattcctaaagcattggataaacggaggattttatggac
tcgaatctgctcttttcaaagtaccaagaaaccgtgtggataaagtttttaagggtgtga
accacaaagatacatgtgcagaggacttagacaatcttccacgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTCCTTGGAATCCCCTGGAAGT 560 661 242 Antisense
GGATCATTCTCAGTGTGTACTCCAT 594 511 285 Antisense
GAACTACCCTAGAATGTGTCTCTAC 546 349 398 Antisense
GTCTCTACAAATGTTTGGCTCCACA 245 469 415 Antisense
TTTCCAGTGGCTCCCTTGAAATCAC 27 669 455 Antisense
ATCACTCTTCCGGATTTCAAAGGGT 84 27 475 Antisense
AATGTTGAGCTCACACTGCCAGAAT 187 165 507 Antisense
CCAGAATTTGACTGTTGCCTCCGGG 97 273 525 Antisense
CGGGCTCACTGATCTTCTGAGTGTC 93 245 546 Antisense
TATGGACTCGAATCTGCTCTTTTCA 321 655 655 Antisense
GAGGACTTAGACAATCTTCCACGGA 272 405 742 Antisense
Sequence Source Affymetrix Proprietary Database