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[180018_at]

Description F56F4.1 /REP_DB=WormBase Gene ID /WP=CE11260 /TR=O01846 /GB=AAB54198.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 01      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 19.6
(-1.5)
A 		4.3
(-3)
A 		7
(-2.7)
A 		64.9
(3)
A 		61
B 20.2
(-3)
A 		32.5
(0.6)
A 		40.4
(2.9)
A 		40.6
(3)
A 		20
C 20.5
(-1.9)
A 		4.4
(-3)
A 		25.7
(-1.6)
A 		94.3
(3)
A 		90
avr 20.1
(-2.3) 		13.7
(-3) 		24.4
(-1.8) 		66.6
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 4.7
(-2.9)
A 		3.5
(-3)
A 		41.5
(-0.9)
A 		14.4
(-2.4)
A 		44.5
(-0.7)
A 		111.1
(3)
P 		108
B 23.9
(-2.2)
A 		8.1
(-3)
A 		18.2
(-2.5)
A 		39.4
(-1.4)
A 		39.5
(-1.4)
A 		127.1
(3)
P 		119
C 33.2
(-1.6)
A 		68.9
(0.1)
A 		4.9
(-3)
A 		9.8
(-2.8)
A 		13.4
(-2.6)
A 		129.4
(3)
P 		125
avr 20.6
(-3) 		26.8
(-2.6) 		21.5
(-2.9) 		21.2
(-3) 		32.5
(-2.3) 		122.5
(3) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.2
(1.4)
A 		0.9
(-3)
A 		1.8
(-2.4)
A 		9.5
(3)
A 		9
B 6.5
(-3)
A 		8
(0.1)
A 		9.4
(3)
A 		8.6
(1.3)
A 		3
C 6.8
(-0.7)
A 		1.3
(-3)
A 		9
(0.2)
A 		15.9
(3)
A 		15
avr 6.8
(-0.4) 		3.4
(-3) 		6.7
(-0.5) 		11.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1.2
(-2.9)
A 		9
(-1.1)
A 		3.7
(-2.4)
A 		13.4
(-0.1)
A 		27.1
(3)
P 		26
B 8.3
(-2.2)
A 		2.7
(-3)
A 		4.4
(-2.8)
A 		10.4
(-2)
A 		16.1
(-1.2)
A 		47.4
(3)
P 		45
C 12.3
(-1.4)
A 		21
(-0.2)
A 		1.3
(-3)
A 		2
(-2.9)
A 		4.3
(-2.6)
A 		43.3
(3)
P 		42
avr 7.2
(-2.6) 		8.3
(-2.4) 		4.9
(-3) 		5.4
(-2.9) 		11.3
(-1.9) 		39.3
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180018_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1889
Sequence Type Exemplar sequence
Representative Public ID F56F4.1 NCBI
Target Description F56F4.1 /REP_DB=WormBase Gene ID /WP=CE11260 /TR=O01846 /GB=AAB54198.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026335(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026335 NCBI Caenorhabditis elegans F56F4.1 (F56F4.1) mRNA, complete cds. 11/11 None
SNAP00000036033 ENSEMBL cdna:SNAP chromosome:CEL140:I:6157801:6158565:1 11/11 None
GENEFINDER00000036044 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6157801:6165155:1 11/11 None
F56F4.1 ENSEMBL cdna:known chromosome:CEL140:I:6156213:6158565:1 gene:F56F4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6156212-6158494(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-22
Ensembl F56F4.1
Entrez Gene 172299 Entrez gene
WormBase CE39020 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001021506 F56F4.1 [Caenorhabditis elegans] 0.0
blast AAS80340 Hypothetical protein F56F4.1 [Caenorhabditis elegans] 0.0
blast T15241 hypothetical protein F56F4.1 - Caenorhabditis elegans 1.0E-135
blast AAB53007 Hypothetical protein T09B4.5a [Caenorhabditis elegans] ref|NP_491774.1| T09B4.5a [Caenorhabditis elegans] 1.0E-134
blast AAS80340 Hypothetical protein F56F4.1 [Caenorhabditis elegans] 1.0E-133
blast AAS80340 Hypothetical protein F56F4.1 [Caenorhabditis elegans] 1.0E-132
blast NP_001021506 F56F4.1 [Caenorhabditis elegans] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 6.6E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021506.1 1 153-175
F56F4.1 1 153-175
GENEFINDER00000036044 2 485-507,520-542
Sequence
Target Sequence 
>C. ELEGANS:180018_AT
acttggtcctgtcccaatggaacaaacctatctcactttcacatgtcattcaactgggct
ctatgtgaaagctgtagtagatgagatgcacacagttatcgatatcatgacttatgaaaa
agatgactgctttaaatggactgaaacaacttgcttaaaatgcattgaaaaagttcgatg
tgttcttgctgatggaaagtgtccagttccatttgcattggacatttttgtaacggaagc
agatattgaacattcggactctgaatcagaagctatcgatcagcaagggacggttgtcaa
tgtggagttagaatcagaagaggagaaaacaattattactgctggagaattgaattcgga
ctctgattcggtggctatcaatcaagaaattaattatgaatttagtgttgaattatcaac
ttcttcaggagaaaatcaatatttggagtctgacagtaaagtaattgaagagaagattca
gtgcaaacctctagcacttgaagtctttgatttcagttgtctggattacgagtacgatta
cagcgattggatcagctttgtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTGGTCCTGTCCCAATGGAACAA 39 103 714 Antisense
TGGAACAAACCTATCTCACTTTCAC 272 547 731 Antisense
ATCTCACTTTCACATGTCATTCAAC 170 33 743 Antisense
GATGCACACAGTTATCGATATCATG 577 411 798 Antisense
AAGTTCGATGTGTTCTTGCTGATGG 71 157 884 Antisense
GGAAAGTGTCCAGTTCCATTTGCAT 109 527 907 Antisense
ATCGATCAGCAAGGGACGGTTGTCA 526 33 988 Antisense
ATTCGGACTCTGATTCGGTGGCTAT 470 9 1067 Antisense
GCAAACCTCTAGCACTTGAAGTCTT 264 319 1196 Antisense
GAAGTCTTTGATTTCAGTTGTCTGG 231 337 1213 Antisense
ACAGCGATTGGATCAGCTTTGTCGA 243 109 1253 Antisense
Sequence Source Affymetrix Proprietary Database