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[180017_s_at]

Description F47B10.8 /REP_DB=WormBase Gene ID /WP=CE03358 /TR=Q20508 /GB=CAA91988.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 92      6grp_total > 84      4grp_total > 14      6grp_high1_sub > 04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 176.6
(2.5)
P 		105.2
(-3)
A 		117.9
(-2)
P 		183.1
(3)
P 		78
B 143.7
(1.5)
P 		64.8
(-3)
A 		109.2
(-0.5)
A 		169.3
(3)
M 		105
C 139.5
(1.1)
P 		104.3
(-1.2)
A 		76.9
(-3)
P 		168.2
(3)
P 		91
avr 153.3
(1.5) 		91.4
(-3) 		101.3
(-2.3) 		173.5
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 120.5
(-1.6)
P 		95.9
(-3)
A 		155.9
(0.3)
P 		137.9
(-0.7)
P 		204.9
(3)
P 		155.1
(0.3)
P 		109
B 134.4
(-1.7)
P 		118.7
(-2.9)
P 		116.7
(-3)
M 		181.3
(1.8)
P 		197.7
(3)
P 		169.6
(0.9)
P 		81
C 103.5
(-1.4)
P 		129.1
(-0.2)
P 		71.5
(-3)
P 		192.9
(3)
P 		133.8
(0.1)
P 		121.1
(-0.5)
P 		121
avr 119.5
(-2.5) 		114.6
(-3) 		114.7
(-3) 		170.7
(2.2) 		178.8
(3) 		148.6
(0.2) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 64.3
(3)
P 		22.8
(-3)
A 		30.8
(-1.8)
P 		26.8
(-2.4)
P 		42
B 45.8
(3)
P 		16
(-3)
A 		25.3
(-1.1)
A 		36.1
(1)
M 		30
C 46.2
(3)
P 		30
(-2)
A 		26.8
(-3)
P 		28.4
(-2.5)
P 		19
avr 52.1
(3) 		22.9
(-3) 		27.6
(-2) 		30.4
(-1.5) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 22.2
(-3)
P 		34.1
(-1.2)
A 		34
(-1.2)
P 		35
(-1.1)
P 		61.8
(3)
P 		37.8
(-0.6)
P 		40
B 46.8
(-0.9)
P 		39.5
(-1.7)
P 		28.3
(-3)
M 		48
(-0.7)
P 		80.3
(3)
P 		63.3
(1)
P 		52
C 38.4
(1.8)
P 		39.4
(2.1)
P 		18.2
(-3)
P 		38.8
(1.9)
P 		43.3
(3)
P 		40.5
(2.3)
P 		25
avr 35.8
(-1.5) 		37.7
(-1.1) 		26.8
(-3) 		40.6
(-0.6) 		61.8
(3) 		47.2
(0.5) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180017_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16708
Sequence Type Exemplar sequence
Representative Public ID F47B10.8 NCBI
Target Description F47B10.8 /REP_DB=WormBase Gene ID /WP=CE03358 /TR=Q20508 /GB=CAA91988.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077422(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077422 NCBI Caenorhabditis elegans F47B10.8 (F47B10.8) mRNA, complete cds. 11/11 None
SNAP00000040449 ENSEMBL cdna:SNAP chromosome:CEL140:X:10905310:10906503:-1 9/11 None
GENEFINDER00000040457 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10905310:10910691:-1 11/11 None
F47B10.8 ENSEMBL cdna:known chromosome:CEL140:X:10905171:10906503:-1 gene:F47B10.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10905309-10906503(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47B10.8
Entrez Gene 181282 Entrez gene
SwissProt Q20508 EMBL-EBI
WormBase CE32424 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE70797 Hypothetical protein CBG17557 [Caenorhabditis briggsae] 1.0E-122
blast CAA91988 Hypothetical protein F47B10.8 [Caenorhabditis elegans] ref|NP_509823.2| F47B10.8 [Caenorhabditis elegans] 1.0E-119
blast CAA91988 Hypothetical protein F47B10.8 [Caenorhabditis elegans] ref|NP_509823.2| F47B10.8 [Caenorhabditis elegans] 1.0E-102
blast CAA91988 Hypothetical protein F47B10.8 [Caenorhabditis elegans] ref|NP_509823.2| F47B10.8 [Caenorhabditis elegans] 2.0E-99
blast CAE70797 Hypothetical protein CBG17557 [Caenorhabditis briggsae] 4.0E-95
blast CAE70797 Hypothetical protein CBG17557 [Caenorhabditis briggsae] 5.0E-77
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509823.2 4 71-90,100-119,131-153,188-210
F47B10.8 4 71-90,100-119,131-153,188-210
SNAP00000040449 4 45-67,77-96,108-130,165-187
GENEFINDER00000040457 4 130-149,159-178,190-212,264-286
Sequence
Target Sequence 
>C. ELEGANS:180017_S_AT
ggtttcacggaagatcccattcctcccaacagttattgctgcaattcttgtcatattcaa
aaagcgtgccgagcagttgcagtatttgcctttttaggatttatcataaaccttgttcta
tattttatgggcatctcaaaactcggtctaaacggatatctcgaagcgttccttcttata
ttcgactgcatttctctgctgactctgttttgtggtgtctcaaagcaacgttcgggattg
ctgaagccgtacttgttttacaatgtaatatggaactttggcatgataattttgttcctg
gtttttgtgtaccacatgttgaagggaactagtgatgtatcgaggttttgggaactaaca
gactcggaacaaactaaaaacaactatatttacaggaacatcctcgacaatcttaaagct
ttgcgatcaaatccagatgagtatcacttccgatcaagagaaagtgttaccactgcaatc
ctggtcacactgggtgtgatggctgccatgtcgtttgttatagtcataaattgcatattt
ttgcatgttgtctaccgcacttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTTCACGGAAGATCCCATTCCTC 563 505 151 Antisense
CATTCCTCCCAACAGTTATTGCTGC 500 217 168 Antisense
AAGCGTGCCGAGCAGTTGCAGTATT 126 151 212 Antisense
GAAGCGTTCCTTCTTATATTCGACT 97 339 313 Antisense
TATTCGACTGCATTTCTCTGCTGAC 257 665 329 Antisense
CTCTGCTGACTCTGTTTTGTGGTGT 370 231 344 Antisense
GTGTCTCAAAGCAACGTTCGGGATT 222 487 365 Antisense
GGAACATCCTCGACAATCTTAAAGC 134 529 545 Antisense
TGCAATCCTGGTCACACTGGGTGTG 184 575 624 Antisense
TGGCTGCCATGTCGTTTGTTATAGT 167 545 650 Antisense
TTTTGCATGTTGTCTACCGCACTTT 390 673 689 Antisense
Sequence Source Affymetrix Proprietary Database