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[180016_at]

Description R05D11.8 /REP_DB=WormBase Gene ID /WP=CE06243 /TR=Q21740 /GB=CAA99895.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      4grp_highest_8_8 > 53      4grp_high_8_8 > 08      6grp_highest_nonorm > 84      6grp_total > 68      4grp_total > 23      6grp_highest_sub > Da      6grp_cgc > 39      6grp_high1_sub > Da      6grp_cgc_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 266
1 2 3 4 range
A 603.3
(3)
P 		360.8
(-2.5)
P 		337.9
(-3)
P 		495.2
(0.6)
P 		265
B 524.3
(2.5)
P 		362.2
(-3)
P 		376.4
(-2.5)
P 		538.7
(3)
P 		177
C 603.4
(3)
P 		376.5
(-3)
P 		435.6
(-1.4)
P 		462.1
(-0.7)
P 		227
avr 577
(3) 		366.5
(-3) 		383.3
(-2.5) 		498.7
(0.8) 		211

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 465
1 2 3 4 5 6 range
A 459.9
(-3)
P 		485.4
(-2.6)
P 		460.6
(-3)
P 		578.7
(-1.1)
P 		513.9
(-2.1)
P 		831.4
(3)
P 		372
B 580.1
(0.7)
P 		524.8
(-0.3)
P 		366.8
(-3)
P 		494.9
(-0.8)
P 		478.1
(-1.1)
P 		712.4
(3)
P 		346
C 600.9
(-0.3)
P 		486.2
(-3)
P 		571.5
(-1)
P 		564.1
(-1.1)
P 		608
(-0.1)
P 		736.9
(3)
P 		251
avr 547
(-1.4) 		498.8
(-2.3) 		466.3
(-3) 		545.9
(-1.4) 		533.3
(-1.6) 		760.2
(3) 		294
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 219.7
(3)
P 		78.3
(-2.8)
P 		88.3
(-2.4)
P 		72.5
(-3)
P 		147
B 167.2
(3)
P 		89.4
(-2.8)
P 		87.2
(-3)
P 		114.8
(-0.9)
P 		80
C 199.8
(3)
P 		108.2
(-1.5)
P 		151.8
(0.6)
P 		77.9
(-3)
P 		122
avr 195.6
(3) 		92
(-2.8) 		109.1
(-1.8) 		88.4
(-3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 84.8
(-3)
P 		172.6
(1.5)
P 		100.3
(-2.2)
P 		146.8
(0.2)
P 		155.1
(0.6)
P 		202.4
(3)
P 		118
B 201.8
(0.8)
P 		174.7
(-0.1)
P 		89.1
(-3)
P 		131.1
(-1.6)
P 		194.2
(0.6)
P 		265.7
(3)
P 		177
C 222.7
(1.9)
P 		148.3
(-1.4)
P 		145.5
(-1.6)
P 		113.4
(-3)
P 		196.8
(0.8)
P 		246.7
(3)
P 		133
avr 169.8
(-0.2) 		165.2
(-0.5) 		111.6
(-3) 		130.4
(-2.1) 		182
(0.3) 		238.3
(3) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180016_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1874
Sequence Type Exemplar sequence
Representative Public ID R05D11.8 NCBI
Target Description R05D11.8 /REP_DB=WormBase Gene ID /WP=CE06243 /TR=Q21740 /GB=CAA99895.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059927(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059927 NCBI Caenorhabditis elegans yeast Enhancer of DeCapping homolog family member (edc-3) (edc-3) mRNA, complete cds. 11/11 None
SNAP00000034023 ENSEMBL cdna:SNAP chromosome:CEL140:I:8610279:8612829:1 11/11 None
GENEFINDER00000034029 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8610279:8612829:1 11/11 None
R05D11.8 ENSEMBL cdna:known chromosome:CEL140:I:8610250:8613277:1 gene:R05D11.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8610209-8612760(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol edc-3
Ensembl R05D11.8
Entrez Gene 172653 Entrez gene
SwissProt Q21740 EMBL-EBI
WormBase CE06243 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99895 Hypothetical protein R05D11.8 [Caenorhabditis elegans] ref|NP_492328.1| yeast Enhancer of DeCapping homolog family member (edc-3) [Caenorhabditis elegans] 0.0
blast CAE67095 Hypothetical protein CBG12506 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180016_AT
cgatcgcatcttccaatgggtctcagaagttcaaaattcgtatggtgatgcacatggaac
tgtagttcttctcgcatcttctgcaaactctgttcgttccattcgtcgtctgctcaccca
tttcgacaagcgacgttacaattgtcatttattcggaaaatatccaggagagatctttga
tcatgtcaatgtggtcactgatgtaaagatgcttccgagagaagttccgataatctgtat
tctctcaccagtcgtcaacgacgatgttgaatgttggctccgtgctcaaagcaatggagc
ttcttctcattacgtatgcattgaaaatgttccaagtgttctcgaaccatctcgatgcca
tttgcttcaatttggatgtgctacaaacggacttcggcatgcggaacgtaaggttcaaac
gataaatcgtggaggtatcacttttgaacatttgtgccagggtaaaatgcacgaggagac
aagttctattcttgttgatagtgccattgctgacctcggatctccatcgaattggttcga
caacacatcttccaaattcatttctaccgcattct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATCGCATCTTCCAATGGGTCTCA 514 249 1101 Antisense
TCGCATCTTCTGCAAACTCTGTTCG 209 601 1172 Antisense
TAATCTGTATTCTCTCACCAGTCGT 483 635 1331 Antisense
GATGTTGAATGTTGGCTCCGTGCTC 692 409 1363 Antisense
GAGCTTCTTCTCATTACGTATGCAT 371 389 1397 Antisense
GAACCATCTCGATGCCATTTGCTTC 61 347 1444 Antisense
GCTACAAACGGACTTCGGCATGCGG 618 301 1480 Antisense
TGTTGATAGTGCCATTGCTGACCTC 503 563 1593 Antisense
GACCTCGGATCTCCATCGAATTGGT 196 381 1612 Antisense
GTTCGACAACACATCTTCCAAATTC 571 441 1635 Antisense
TCCAAATTCATTTCTACCGCATTCT 576 587 1651 Antisense
Sequence Source Affymetrix Proprietary Database