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[180015_at]

Description F56D5.10 /REP_DB=WormBase Gene ID /WP=CE05966 /TR=Q20882 /GB=CAA93501.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 17      6grp_cgc > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.6
(-3)
A 		4
(1.7)
A 		3.7
(0.7)
A 		4.4
(3)
A 		2
B 2.7
(-3)
A 		3.1
(-2.5)
A 		3.2
(-2.4)
A 		7.4
(3)
A 		5
C 2.4
(-2.6)
A 		3.3
(-1.1)
A 		2.2
(-3)
A 		5.6
(3)
A 		3
avr 2.6
(-3) 		3.5
(-1.3) 		3
(-2.3) 		5.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 6.7
(3)
A 		3.3
(-2.2)
A 		3.3
(-2.2)
A 		2.8
(-3)
A 		6.7
(3)
A 		3.4
(-2.1)
A 		4
B 5.4
(2.8)
A 		3.9
(-0.2)
A 		3.7
(-0.6)
A 		5.5
(3)
A 		2.6
(-2.8)
A 		2.5
(-3)
A 		3
C 2.7
(-1.5)
A 		4.2
(1.3)
A 		3.2
(-0.6)
A 		5.1
(3)
A 		4.6
(2.1)
A 		1.9
(-3)
A 		3
avr 4.9
(3) 		3.8
(0.1) 		3.4
(-0.9) 		4.5
(2) 		4.6
(2.2) 		2.6
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.9
(1.5)
A 		0.9
(1.5)
A 		1
(3)
A 		0.6
(-3)
A 		0
B 0.9
(-1.7)
A 		0.8
(-2.3)
A 		0.7
(-3)
A 		1.6
(3)
A 		1
C 0.8
(-3)
A 		1
(3)
A 		0.8
(-3)
A 		1
(3)
A 		0
avr 0.9
(-1) 		0.9
(-1) 		0.8
(-3) 		1.1
(3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 1.2
(-0.7)
A 		1.2
(-0.7)
A 		0.7
(-3)
A 		0.7
(-3)
A 		2
(3)
A 		0.8
(-2.5)
A 		1
B 1.9
(3)
A 		1.3
(-0.6)
A 		0.9
(-3)
A 		1.5
(0.6)
A 		1.1
(-1.8)
A 		0.9
(-3)
A 		1
C 1
(-0.8)
A 		1.3
(1.5)
A 		0.8
(-2.3)
A 		1
(-0.8)
A 		1.5
(3)
A 		0.7
(-3)
A 		1
avr 1.4
(2.1) 		1.3
(1.3) 		0.8
(-3) 		1.1
(-0.4) 		1.5
(3) 		0.8
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180015_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9607
Sequence Type Exemplar sequence
Representative Public ID F56D5.10 NCBI
Target Description F56D5.10 /REP_DB=WormBase Gene ID /WP=CE05966 /TR=Q20882 /GB=CAA93501.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069262(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069262 NCBI Caenorhabditis elegans Serpentine Receptor, class XA family member (srxa-2) (srxa-2) mRNA, complete cds. 11/11 None
GENEFINDER00000006191 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9423372:9424392:1 11/11 None
F56D5.10 ENSEMBL cdna:known chromosome:CEL140:IV:9423372:9424392:1 gene:F56D5.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9423377-9424398(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srxa-2
Ensembl F56D5.10
Entrez Gene 186387 Entrez gene
SwissProt Q20882 EMBL-EBI
WormBase CE05966 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93501 Hypothetical protein F56D5.10 [Caenorhabditis elegans] ref|NP_501663.1| Serpentine Receptor, class XA family member (srxa-2) [Caenorhabditis elegans] 1.0E-163
blast CAB04930 Hypothetical protein W07A8.1 [Caenorhabditis elegans] ref|NP_508003.1| Serpentine Receptor, class XA family member (srxa-1) [Caenorhabditis elegans] 3.0E-96
blast CAE61647 Hypothetical protein CBG05581 [Caenorhabditis briggsae] 3.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 6.5E-107
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 1.1E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501663.1 6 7-29,53-75,96-118,148-166,197-216,231-250
F56D5.10 6 7-29,53-75,96-118,148-166,197-216,231-250
GENEFINDER00000006191 6 7-29,53-75,96-118,148-166,197-216,231-250
Sequence
Target Sequence 
>C. ELEGANS:180015_AT
ggttcagcgacacgaaggttgttgtgtattgcactggggttacgattctcattaccattt
ggcttctgattccatatttttcaaattgctcattaaacttcaatgctttgaccagttacc
acgaatcagcatgtgctccgtctcgtcatccaatcactttatttcaaaataactttctta
tttatgttccaattgtgtcaatggtagtcaattctggaattctaatttatcaaaaatatc
tgagaaatcgctggaagagcactgcctcgtcaatatctttgtcacacgtaaaacgagaaa
atgaaatgattcgtcaagcatgttttattggagtttatttgagtgtttatgagattttat
acttacacatgaggctttatccgcaacattttgaaaatcttcccttcgagcttcaaacaa
tatcctatgatctacgtttgctggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCAGCGACACGAAGGTTGTTGT 379 507 281 Antisense
ATTGCACTGGGGTTACGATTCTCAT 126 7 308 Antisense
ACGATTCTCATTACCATTTGGCTTC 46 95 322 Antisense
ATGCTTTGACCAGTTACCACGAATC 415 43 383 Antisense
ACCACGAATCAGCATGTGCTCCGTC 665 85 398 Antisense
TCTCGTCATCCAATCACTTTATTTC 426 611 421 Antisense
AAATCGCTGGAAGAGCACTGCCTCG 359 119 525 Antisense
ACTGCCTCGTCAATATCTTTGTCAC 351 99 541 Antisense
GAGGCTTTATCCGCAACATTTTGAA 87 405 651 Antisense
TCTTCCCTTCGAGCTTCAAACAATA 156 617 678 Antisense
ATCCTATGATCTACGTTTGCTGGCA 543 39 702 Antisense
Sequence Source Affymetrix Proprietary Database