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[180014_s_at]

Description K07A1.13 /REP_DB=WormBase Gene ID /WP=CE18857 /TR=Q9XVL4 /GB=CAB03173.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 08      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 566
1 2 3 4 range
A 59.9
(-3)
A 		76.6
(-2.8)
A 		129.4
(-2.1)
M 		499.2
(3)
P 		439
B 32.3
(-3)
A 		80.5
(-2.4)
A 		175.4
(-1.3)
P 		535.2
(3)
P 		503
C 55.6
(-2.8)
A 		34.8
(-3)
A 		96.7
(-2.3)
P 		598.3
(3)
P 		564
avr 49.3
(-3) 		64
(-2.8) 		133.8
(-2) 		544.2
(3) 		495

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 65.8
(-2.8)
A 		57.1
(-3)
A 		162.6
(-0.1)
P 		149.3
(-0.5)
P 		278.7
(3)
P 		212.6
(1.2)
P 		222
B 43.5
(-3)
A 		144.1
(-0.2)
A 		203.8
(1.5)
P 		144
(-0.2)
P 		256.1
(3)
P 		240.4
(2.6)
P 		213
C 39.5
(-3)
A 		126.7
(-0.6)
A 		89.5
(-1.6)
A 		253.7
(3)
P 		249.7
(2.9)
P 		233.2
(2.4)
P 		214
avr 49.6
(-3) 		109.3
(-1.3) 		152
(-0.1) 		182.3
(0.8) 		261.5
(3) 		228.7
(2.1) 		212
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 21.8
(-2.4)
A 		16.6
(-3)
A 		33.8
(-1.2)
M 		73.1
(3)
P 		57
B 10.3
(-3)
A 		19.9
(-2.4)
A 		40.7
(-1.2)
P 		114
(3)
P 		104
C 18.4
(-2.4)
A 		10
(-3)
A 		33.7
(-1.4)
P 		100.9
(3)
P 		91
avr 16.8
(-2.9) 		15.5
(-3) 		36.1
(-1.5) 		96
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 12.1
(-3)
A 		20.3
(-2.3)
A 		35.4
(-1.1)
P 		37.9
(-0.9)
P 		84.1
(3)
P 		51.8
(0.3)
P 		72
B 15.1
(-3)
A 		48
(-0.8)
A 		49.5
(-0.7)
P 		38.1
(-1.4)
P 		104.1
(3)
P 		89.6
(2)
P 		89
C 14.6
(-3)
A 		38.6
(-0.8)
A 		22.8
(-2.3)
A 		51
(0.3)
P 		80.8
(3)
P 		78.1
(2.8)
P 		66
avr 13.9
(-3) 		35.6
(-1.3) 		35.9
(-1.3) 		42.3
(-0.8) 		89.7
(3) 		73.2
(1.7) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180014_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1861
Sequence Type Exemplar sequence
Representative Public ID K07A1.13 NCBI
Target Description K07A1.13 /REP_DB=WormBase Gene ID /WP=CE18857 /TR=Q9XVL4 /GB=CAB03173.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060140(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060140 NCBI Caenorhabditis elegans K07A1.13 (K07A1.13) mRNA, complete cds. 11/11 None
SNAP00000041843 ENSEMBL cdna:SNAP chromosome:CEL140:I:9592100:9592854:-1 11/11 None
GENEFINDER00000041866 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9592100:9592854:-1 11/11 None
K07A1.13 ENSEMBL cdna:known chromosome:CEL140:I:9592064:9592854:-1 gene:K07A1.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9592030-9592785(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07A1.13
Entrez Gene 172793 Entrez gene
SwissProt Q9XVL4 EMBL-EBI
WormBase CE18857 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03173 Hypothetical protein K07A1.13 [Caenorhabditis elegans] ref|NP_492541.1| K07A1.13 [Caenorhabditis elegans] 1.0E-87
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492541.1 3 32-54,75-97,121-143
K07A1.13 3 32-54,75-97,121-143
SNAP00000041843 3 32-54,75-97,121-143
GENEFINDER00000041866 3 32-54,75-97,121-143
Sequence
Target Sequence 
>C. ELEGANS:180014_S_AT
atgccgtcgcaaacaatttttcctaagagaacgagaagaaatagaaccatacaatctttg
aacagactccccgaggatgatggagatccaacaattacaggaatcgctatcattttggga
atcgctgaactgattgtcagcttcctgttcctcattttctctcaaaactactattttttt
gcccaacttggtcttcaactcttctttatggccttggaatcttacagtttatttgtcgga
tttctcgttgtggcctatgccggagctttcgagatcattattcttctagttttttgtgga
tttgagactttcaaacctgagagatccctcattccaaccgcttttccaggaatcactgaa
acaggccgcctttggattatcattgccggatatgctttggtcttttggtgcggattacgt
cttatttggactcgtcgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCGTCGCAAACAATTTTTCCTA 217 41 13 Antisense
TACAATCTTTGAACAGACTCCCCGA 331 641 62 Antisense
GAACTGATTGTCAGCTTCCTGTTCC 366 349 139 Antisense
GTTCCTCATTTTCTCTCAAAACTAC 301 441 159 Antisense
CTTCAACTCTTCTTTATGGCCTTGG 84 223 205 Antisense
ATTTGTCGGATTTCTCGTTGTGGCC 446 15 243 Antisense
CCTATGCCGGAGCTTTCGAGATCAT 444 269 266 Antisense
TTCCAACCGCTTTTCCAGGAATCAC 691 685 344 Antisense
AACAGGCCGCCTTTGGATTATCATT 471 137 372 Antisense
CATTGCCGGATATGCTTTGGTCTTT 330 217 393 Antisense
TACGTCTTATTTGGACTCGTCGAGC 601 645 428 Antisense
Sequence Source Affymetrix Proprietary Database