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[180013_at]

Description T12B5.1 /REP_DB=WormBase Gene ID /WP=CE20059 /TR=Q9TZ19 /GB=AAC68927.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 01      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 77.7
(-1.6)
A 		84.1
(-0.8)
A 		67
(-3)
A 		113.5
(3)
A 		47
B 92.1
(1.3)
A 		83.1
(-1.9)
A 		96.9
(3)
A 		80.1
(-3)
A 		17
C 90.3
(-2.1)
A 		75.4
(-3)
A 		97.4
(-1.6)
A 		170.6
(3)
P 		95
avr 86.7
(-2.1) 		80.9
(-3) 		87.1
(-2.1) 		121.4
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 62.8
(-2.8)
A 		98.5
(-1.3)
A 		199.3
(3)
P 		168.9
(1.7)
P 		103.1
(-1.1)
A 		58.2
(-3)
A 		141
B 53.2
(-3)
A 		145.2
(3)
P 		123.7
(1.6)
P 		130.7
(2.1)
M 		118.2
(1.2)
P 		56.7
(-2.8)
A 		92
C 74
(-2.3)
A 		141.7
(1.7)
P 		114.9
(0.1)
A 		164.3
(3)
A 		90.5
(-1.3)
A 		61.9
(-3)
A 		102
avr 63.3
(-2.7) 		128.5
(1.4) 		146
(2.5) 		154.6
(3) 		103.9
(-0.2) 		58.9
(-3) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 28.3
(3)
A 		18.3
(-2.1)
A 		17.5
(-2.5)
A 		16.6
(-3)
A 		12
B 29.4
(3)
A 		20.5
(-1.3)
A 		22.5
(-0.4)
A 		17.1
(-3)
A 		12
C 29.9
(1)
A 		21.7
(-3)
A 		33.9
(3)
A 		28.8
(0.5)
P 		12
avr 29.2
(3) 		20.2
(-3) 		24.6
(-0.1) 		20.8
(-2.6) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 11.6
(-3)
A 		35
(1.4)
A 		43.4
(3)
P 		42.8
(2.9)
P 		31.1
(0.7)
A 		14.2
(-2.5)
A 		32
B 18.5
(-3)
A 		48.3
(3)
P 		30
(-0.7)
P 		34.6
(0.2)
M 		48
(2.9)
P 		21.1
(-2.5)
A 		30
C 27.4
(-1.2)
A 		43.2
(3)
P 		29.2
(-0.7)
A 		33
(0.3)
A 		29.3
(-0.7)
A 		20.7
(-3)
A 		23
avr 19.2
(-2.9) 		42.2
(3) 		34.2
(1) 		36.8
(1.6) 		36.1
(1.4) 		18.7
(-3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180013_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8194
Sequence Type Exemplar sequence
Representative Public ID T12B5.1 NCBI
Target Description T12B5.1 /REP_DB=WormBase Gene ID /WP=CE20059 /TR=Q9TZ19 /GB=AAC68927.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064906(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064906 NCBI Caenorhabditis elegans T12B5.1 (T12B5.1) mRNA, complete cds. 11/11 None
GENEFINDER00000007712 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:962291:963492:1 11/11 None
SNAP00000007706 ENSEMBL cdna:SNAP chromosome:CEL140:III:962351:965084:1 10/11 None
T12B5.1 ENSEMBL cdna:known chromosome:CEL140:III:962291:963513:1 gene:T12B5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:962290-963513(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T12B5.1
Entrez Gene 188440 Entrez gene
SwissProt Q9TZ19 EMBL-EBI
WormBase CE20059 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68927 Hypothetical protein T12B5.1 [Caenorhabditis elegans] ref|NP_497307.1| T12B5.1 [Caenorhabditis elegans] 1.0E-176
blast AAC68927 Hypothetical protein T12B5.1 [Caenorhabditis elegans] ref|NP_497307.1| T12B5.1 [Caenorhabditis elegans] 1.0E-173
blast AAC68927 Hypothetical protein T12B5.1 [Caenorhabditis elegans] ref|NP_497307.1| T12B5.1 [Caenorhabditis elegans] 1.0E-121
blast AAC68933 Hypothetical protein T12B5.8 [Caenorhabditis elegans] ref|NP_497299.2| T12B5.8 [Caenorhabditis elegans] 1.0E-99
blast AAC68934 Hypothetical protein T12B5.10 [Caenorhabditis elegans] ref|NP_497300.1| T12B5.10 [Caenorhabditis elegans] 2.0E-98
blast AAC68933 Hypothetical protein T12B5.8 [Caenorhabditis elegans] ref|NP_497299.2| T12B5.8 [Caenorhabditis elegans] 4.0E-98
blast AAC68934 Hypothetical protein T12B5.10 [Caenorhabditis elegans] ref|NP_497300.1| T12B5.10 [Caenorhabditis elegans] 1.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.2E-60
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.2E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.6E-38
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.4E-10
Sequence
Target Sequence 
>C. ELEGANS:180013_AT
gatagtgtcggagcacgcactgaaaatcataattagaaattcgaaagatagcgacattgt
tacaactttcaataagcttttgaaatccgaaacatgtgtacccgtaaaggaaataagact
tttgtatttctcctttgatgaagtcatcacgattcttccatgttttgatgcaaaagggct
caaaatgatggccttggaatatgttgcgtcaaatgaccaattcgaacaaataacccattt
ggagcaatggaaaaaggcagaaaatgttgagctttcgatgtctgttattgccagtacagt
gattcttaactcgtttcatttcaaaagtttcattattcatcaggttgacgaattttcagc
acagaccgcaatacaaataagagatgatcttttgagaagaagtacattccaaagttgcga
gatacattttgacaaatcagagacaaatccgattgaaattgcaaaagtattcaaaccgga
ctatgcaggcggcaatgacttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAGTGTCGGAGCACGCACTGAAA 297 425 357 Antisense
GAAATCCGAAACATGTGTACCCGTA 90 361 438 Antisense
GACTTTTGTATTTCTCCTTTGATGA 98 373 473 Antisense
TGAAGTCATCACGATTCTTCCATGT 469 575 495 Antisense
GATGGCCTTGGAATATGTTGCGTCA 28 407 543 Antisense
GAGCTTTCGATGTCTGTTATTGCCA 176 389 625 Antisense
GTTATTGCCAGTACAGTGATTCTTA 534 447 640 Antisense
GTGATTCTTAACTCGTTTCATTTCA 125 485 655 Antisense
GTTTCATTATTCATCAGGTTGACGA 45 451 683 Antisense
GAATTTTCAGCACAGACCGCAATAC 421 325 706 Antisense
GGACTATGCAGGCGGCAATGACTTC 288 525 834 Antisense
Sequence Source Affymetrix Proprietary Database