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[180011_at]

Description W04E12.2 /REP_DB=WormBase Gene ID /WP=CE18997 /TR=Q9XUL2 /GB=CAB04914.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 05      6grp_total > 85      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 36.6
(-1.3)
P 		35.6
(-1.3)
A 		14.6
(-3)
A 		90.1
(3)
P 		76
B 17.9
(-3)
A 		44.4
(1.7)
A 		33.4
(-0.3)
P 		52
(3)
M 		34
C 13.1
(-3)
A 		29.8
(-0.8)
P 		27.5
(-1.1)
A 		57.8
(3)
P 		45
avr 22.5
(-3) 		36.6
(-1.1) 		25.2
(-2.6) 		66.6
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 25.7
(1.8)
A 		17.8
(0.2)
A 		26.6
(2)
A 		1.4
(-3)
A 		31.8
(3)
A 		15.9
(-0.1)
A 		30
B 25.1
(-3)
A 		27
(-2.4)
A 		38.6
(1.2)
P 		44.6
(3)
A 		28.6
(-1.9)
P 		33.7
(-0.4)
P 		20
C 4.2
(-3)
A 		30.4
(0.5)
A 		8.3
(-2.4)
A 		48.2
(2.9)
P 		21.8
(-0.6)
A 		48.7
(3)
P 		45
avr 18.3
(-3) 		25.1
(-0.2) 		24.5
(-0.4) 		31.4
(2.4) 		27.4
(0.8) 		32.8
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 13.3
(3)
P 		7.7
(-0.5)
A 		3.8
(-3)
A 		13.2
(2.9)
P 		10
B 5.7
(-3)
A 		11
(2.9)
A 		7.7
(-0.8)
P 		11.1
(3)
M 		5
C 4.3
(-3)
A 		8.6
(1.8)
P 		9.6
(2.9)
A 		9.7
(3)
P 		5
avr 7.8
(-1.9) 		9.1
(-0.1) 		7
(-3) 		11.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 4.7
(-0.2)
A 		6.3
(0.9)
A 		5.8
(0.5)
A 		0.3
(-3)
A 		9.6
(3)
A 		3.9
(-0.7)
A 		9
B 8.7
(-3)
A 		9
(-2.5)
A 		9.4
(-1.9)
P 		11.8
(1.8)
A 		11.6
(1.5)
P 		12.6
(3)
P 		4
C 1.5
(-3)
A 		9.3
(0.2)
A 		2.1
(-2.8)
A 		9.7
(0.3)
P 		7.1
(-0.7)
A 		16.3
(3)
P 		15
avr 5
(-3) 		8.2
(0.3) 		5.8
(-2.2) 		7.3
(-0.7) 		9.4
(1.5) 		10.9
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180011_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13878
Sequence Type Exemplar sequence
Representative Public ID W04E12.2 NCBI
Target Description W04E12.2 /REP_DB=WormBase Gene ID /WP=CE18997 /TR=Q9XUL2 /GB=CAB04914.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075424(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075424 NCBI Caenorhabditis elegans W04E12.2 (W04E12.2) mRNA, complete cds. 11/11 None
GENEFINDER00000038176 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19737803:19739034:-1 11/11 None
W04E12.2 ENSEMBL cdna:known chromosome:CEL140:V:19737803:19739034:-1 gene:W04E12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038163 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19737802-19739034(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04E12.2
Entrez Gene 189189 Entrez gene
SwissProt Q9XUL2 EMBL-EBI
WormBase CE18997 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04914 Hypothetical protein W04E12.2 [Caenorhabditis elegans] ref|NP_507825.1| W04E12.2 [Caenorhabditis elegans] 1.0E-110
blast CAB04914 Hypothetical protein W04E12.2 [Caenorhabditis elegans] ref|NP_507825.1| W04E12.2 [Caenorhabditis elegans] 1.0E-106
blast CAB03932 Hypothetical protein C31G12.1 [Caenorhabditis elegans] ref|NP_507553.1| C31G12.1 [Caenorhabditis elegans] 5.0E-96
blast CAB03932 Hypothetical protein C31G12.1 [Caenorhabditis elegans] ref|NP_507553.1| C31G12.1 [Caenorhabditis elegans] 1.0E-92
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507825.1 4 20-42,46-68,143-161,166-185
W04E12.2 4 20-42,46-68,143-161,166-185
GENEFINDER00000038176 4 20-42,87-109,156-174,179-198
Sequence
Target Sequence 
>C. ELEGANS:180011_AT
acgccgaagcgtttggaaatccagttgtgcgtaagctctcgactgtaaatgtcttggctc
tgacagctttcggtctttctatggttattctcagagacgtttttgagctcgattttcttc
tgatgaatacagtggctgttacagttgcatggttctcgtttggttggatttccaccaaaa
actatttcacagtttggagattgaacagtatgtcacttgtttcctgtggatttttgacgc
ttctctgctcgaatcaatacatttgtgatcatcattcttggattgtttcattttcgactt
ttttcttcaccgcccatgttcatctgacaaatgccacaatttctagcattgagcttcctg
aaaagacgagaagatctcatgagcacatcaaacttcaccgacttctagttctgatctttg
tgttctacatcggatcatttttgactgtcagagacggtaatcacgtgacttttctgttcg
gcattttgattgtattgactggtgtcagacttgagatgatcccagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGCCGAAGCGTTTGGAAATCCAGT 130 55 47 Antisense
AGCTCTCGACTGTAAATGTCTTGGC 535 79 80 Antisense
AATGTCTTGGCTCTGACAGCTTTCG 603 163 94 Antisense
GCTTTCGGTCTTTCTATGGTTATTC 185 305 112 Antisense
TTTGAGCTCGATTTTCTTCTGATGA 693 665 148 Antisense
CAGTATGTCACTTGTTTCCTGTGGA 524 207 252 Antisense
TTCCTGTGGATTTTTGACGCTTCTC 244 699 267 Antisense
CGCTTCTCTGCTCGAATCAATACAT 419 255 284 Antisense
GTTCTGATCTTTGTGTTCTACATCG 510 443 454 Antisense
TAATCACGTGACTTTTCTGTTCGGC 55 635 504 Antisense
GTGTCAGACTTGAGATGATCCCAGC 254 487 548 Antisense
Sequence Source Affymetrix Proprietary Database