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[180010_at]

Description C44B7.7 /REP_DB=WormBase Gene ID /WP=CE02545 /TR=Q18596 /GB=AAA68338.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 51      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 43      6grp_total > 51      4grp_total > 57      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 704
1 2 3 4 range
A 436.9
(-1.4)
P 		669.6
(1.2)
P 		827.5
(3)
P 		299.1
(-3)
P 		528
B 484.2
(-1)
P 		731
(1.1)
P 		954.9
(3)
P 		250.7
(-3)
P 		704
C 461.5
(-1.1)
P 		691.9
(1)
P 		901.5
(3)
P 		258.1
(-3)
P 		643
avr 460.9
(-1.2) 		697.5
(1.1) 		894.6
(3) 		269.3
(-3) 		625

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1619
1 2 3 4 5 6 range
A 761.3
(-0.9)
P 		838.2
(-0.6)
P 		1819.2
(3)
P 		1337.1
(1.2)
P 		549.3
(-1.7)
P 		200.5
(-3)
P 		1619
B 717.4
(-1.2)
P 		1204.3
(0.8)
P 		1748.3
(3)
P 		1139.2
(0.5)
P 		596.7
(-1.7)
P 		282.7
(-3)
P 		1466
C 590.2
(-1.5)
P 		1177.1
(1.8)
P 		1040.3
(1)
P 		1394.8
(3)
P 		436.6
(-2.4)
P 		328.9
(-3)
P 		1066
avr 689.6
(-1) 		1073.2
(0.8) 		1535.9
(3) 		1290.4
(1.8) 		527.5
(-1.8) 		270.7
(-3) 		1265
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 159.1
(1)
P 		145.4
(0.5)
P 		216.3
(3)
P 		43.8
(-3)
P 		173
B 154.4
(0.6)
P 		180.5
(1.5)
P 		221.3
(3)
P 		53.4
(-3)
P 		168
C 152.8
(-0.6)
P 		198.9
(0.4)
P 		314.2
(3)
P 		43.5
(-3)
P 		271
avr 155.4
(0.2) 		174.9
(0.8) 		250.6
(3) 		46.9
(-3) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 376
1 2 3 4 5 6 range
A 140.3
(-1.4)
P 		298.1
(1.3)
P 		396.2
(3)
P 		339.1
(2)
P 		165.7
(-1)
P 		48.8
(-3)
P 		347
B 249.6
(-0.3)
P 		400.9
(2.6)
P 		424.5
(3)
P 		301.7
(0.7)
P 		242.4
(-0.4)
P 		105.4
(-3)
P 		319
C 218.8
(-0.4)
P 		359.2
(3)
P 		264.8
(0.7)
P 		280.5
(1.1)
P 		141.3
(-2.2)
P 		110.1
(-3)
P 		249
avr 202.9
(-0.5) 		352.7
(2.8) 		361.8
(3) 		307.1
(1.8) 		183.1
(-0.9) 		88.1
(-3) 		274
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180010_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5584
Sequence Type Exemplar sequence
Representative Public ID C44B7.7 NCBI
Target Description C44B7.7 /REP_DB=WormBase Gene ID /WP=CE02545 /TR=Q18596 /GB=AAA68338.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063005(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063005 NCBI Caenorhabditis elegans C44B7.7 (C44B7.7) mRNA, complete cds. 11/11 None
SNAP00000042324 ENSEMBL cdna:SNAP chromosome:CEL140:II:6879290:6880048:-1 10/11 None
GENEFINDER00000042341 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6879290:6880096:-1 11/11 None
C44B7.7 ENSEMBL cdna:known chromosome:CEL140:II:6879194:6880096:-1 gene:C44B7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6879285-6880092(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44B7.7
Entrez Gene 183430 Entrez gene
SwissProt Q18596 EMBL-EBI
WormBase CE02545 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.5557.1.S1_AT similar to C44B7.7 cfa
DROSOPHILA_2:1627007_AT dm
DROSGENOME1:148995_AT dm
CHICKEN:GGA.7808.1.S1_AT similar to chromosome 7 open reading frame 24 gga
HU35KSUBB:RC_Z38266_AT chromosome 7 open reading frame 24 hs
U133_X3P:HS.288649.2.S1_3P_A_AT chromosome 7 open reading frame 24 hs
HG-U133A_2:215380_S_AT chromosome 7 open reading frame 24 hs
HG-U133_PLUS_2:215380_S_AT chromosome 7 open reading frame 24 hs
HG-U133A:215380_S_AT chromosome 7 open reading frame 24 hs
HG-U95AV2:41696_AT chromosome 7 open reading frame 24 hs
HG-U133_PLUS_2:239841_AT Chromosome 7 open reading frame 24 hs
HG-U133B:239841_AT Chromosome 7 open reading frame 24 hs
HG-U95D:79154_AT Chromosome 7 open reading frame 24 hs
U133_X3P:HS.137390.0.A1_3P_AT Chromosome 7 open reading frame 24 hs
MU11KSUBA:AA673177_RC_AT RIKEN cDNA A030007L17 gene mm
MG-U74AV2:94995_AT RIKEN cDNA A030007L17 gene mm
MG-U74CV2:167971_F_AT RIKEN cDNA A030007L17 gene mm
MOE430A:1429090_AT RIKEN cDNA A030007L17 gene mm
MOUSE430A_2:1429090_AT RIKEN cDNA A030007L17 gene mm
MOUSE430_2:1429090_AT RIKEN cDNA A030007L17 gene mm
MOE430A:1435695_A_AT RIKEN cDNA A030007L17 gene mm
MOUSE430A_2:1435695_A_AT RIKEN cDNA A030007L17 gene mm
MOUSE430_2:1435695_A_AT RIKEN cDNA A030007L17 gene mm
MOE430B:1445855_AT RIKEN cDNA A030007L17 gene mm
MOUSE430_2:1445855_AT RIKEN cDNA A030007L17 gene mm
MU19KSUBB:TC34614_S_AT RIKEN cDNA A030007L17 gene (A030007L17Rik), mRNA mm
RAE230B:1398107_AT similar to RIKEN cDNA A030007L17; EST AA673177 (predicted) rn
RAT230_2:1398107_AT similar to RIKEN cDNA A030007L17; EST AA673177 (predicted) rn
RAE230B:1392541_AT similar to RIKEN cDNA A030007L17; EST AA673177 (predicted) rn
RAT230_2:1392541_AT similar to RIKEN cDNA A030007L17; EST AA673177 (predicted) rn
RAE230B:1398107_AT similar to RIKEN cDNA A030007L17 rn
RAT230_2:1398107_AT similar to RIKEN cDNA A030007L17 rn
RAE230B:1392541_AT similar to RIKEN cDNA A030007L17 rn
RAT230_2:1392541_AT similar to RIKEN cDNA A030007L17 rn
RG-U34C:RC_AI229733_AT Similar to RIKEN cDNA A030007L17; EST AA673177 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAA68338 Hypothetical protein C44B7.7 [Caenorhabditis elegans] ref|NP_495406.1| C44B7.7 [Caenorhabditis elegans] 1.0E-106
blast AAA68338 Hypothetical protein C44B7.7 [Caenorhabditis elegans] ref|NP_495406.1| C44B7.7 [Caenorhabditis elegans] 2.0E-98
blast CAE65984 Hypothetical protein CBG11175 [Caenorhabditis briggsae] 2.0E-80
blast CAE65984 Hypothetical protein CBG11175 [Caenorhabditis briggsae] 3.0E-80
blast XP_854377 PREDICTED: similar to C44B7.7 [Canis familiaris] 1.0E-29
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495406.1 1 15-34
C44B7.7 1 15-34
GENEFINDER00000042341 1 15-34
Sequence
Target Sequence 
>C. ELEGANS:180010_AT
actcaattccatgcaccaagccatgtcattcttctattattttgcgtttggaagtaatct
tctcggagatcgaattcggtacagacaaaaaggtgcagaatacgattgcaatggaaaatt
ggacaattttcgtttagaatttgcaaactattcggaaaggtggcaaggtgcattggcaac
tattaaggaagcggaaggaaaagaggtatggggatgcgtatggaaaatgccaaatgaata
ttcggattcacttgatgagcaagaatttggatatcatagattgatggttcctgtgcaaac
tccaaaaggtgtgatcacttgccgaacttatcaattttcggatctaaaagctgatccaat
ggcaccatccccacactacaaactagttatcacggaaggagccaaagaaaacaaactccc
agcagactacattcaaaaactagaagcaattgaagataacggattcgcgggtgctgttga
cgtggatattcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCAATTCCATGCACCAAGCCATG 262 101 51 Antisense
TGCACCAAGCCATGTCATTCTTCTA 352 577 62 Antisense
GTCATTCTTCTATTATTTTGCGTTT 694 467 75 Antisense
TCTTCTCGGAGATCGAATTCGGTAC 663 615 108 Antisense
GGTGGCAAGGTGCATTGGCAACTAT 234 499 209 Antisense
TGATGGTTCCTGTGCAAACTCCAAA 539 565 332 Antisense
GTGTGATCACTTGCCGAACTTATCA 185 487 359 Antisense
CCATCCCCACACTACAAACTAGTTA 646 271 415 Antisense
AAACTCCCAGCAGACTACATTCAAA 518 127 463 Antisense
AGATAACGGATTCGCGGGTGCTGTT 96 67 504 Antisense
GGGTGCTGTTGACGTGGATATTCCA 14 499 519 Antisense
Sequence Source Affymetrix Proprietary Database