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[180008_at]

Description K06A1.2 /REP_DB=WormBase Gene ID /WP=CE02002 /TR=Q09405 /GB=AAC24297.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 27      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 18.7
(-3)
A 		36.2
(-0.5)
A 		19.6
(-2.9)
A 		61.4
(3)
A 		43
B 6.1
(-3)
A 		49.9
(2.2)
A 		5.7
(-3)
A 		56.6
(3)
A 		51
C 34.2
(1.9)
A 		41.1
(3)
A 		5
(-3)
A 		21.2
(-0.3)
A 		36
avr 19.7
(-1.4) 		42.4
(2.3) 		10.1
(-3) 		46.4
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 6.5
(-3)
A 		28.5
(-1.8)
A 		8.2
(-2.9)
A 		12.6
(-2.7)
A 		73.7
(0.7)
A 		116.5
(3)
P 		110
B 44.3
(-1.1)
A 		11.5
(-3)
A 		19.9
(-2.5)
A 		29.9
(-1.9)
A 		39.4
(-1.4)
A 		113.3
(3)
P 		102
C 2.9
(-3)
A 		43.4
(-1.4)
A 		3.2
(-3)
A 		5.6
(-2.9)
A 		44.2
(-1.3)
A 		151.3
(3)
P 		148
avr 17.9
(-2.6) 		27.8
(-2.1) 		10.4
(-3) 		16
(-2.7) 		52.4
(-0.8) 		127
(3) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 6.8
(-0.4)
A 		7.9
(1.3)
A 		5.1
(-3)
A 		9
(3)
A 		4
B 1.9
(-2.7)
A 		12.3
(3)
A 		1.3
(-3)
A 		12.1
(2.9)
A 		11
C 11.3
(2.7)
A 		11.8
(3)
A 		1.8
(-3)
A 		3.6
(-1.9)
A 		10
avr 6.7
(0) 		10.7
(3) 		2.7
(-3) 		8.2
(1.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 1.2
(-3)
A 		10.2
(-1)
A 		1.8
(-2.9)
A 		3.2
(-2.6)
A 		22.2
(1.6)
A 		28.4
(3)
P 		27
B 15.4
(-1.2)
A 		3.8
(-3)
A 		4.8
(-2.8)
A 		7.9
(-2.4)
A 		16
(-1.1)
A 		42.2
(3)
P 		38
C 1.1
(-3)
A 		13.2
(-1.5)
A 		0.8
(-3)
A 		1.1
(-3)
A 		14.3
(-1.4)
A 		50.7
(3)
P 		50
avr 5.9
(-2.5) 		9.1
(-2) 		2.5
(-3) 		4.1
(-2.7) 		17.5
(-0.6) 		40.4
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180008_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4129
Sequence Type Exemplar sequence
Representative Public ID K06A1.2 NCBI
Target Description K06A1.2 /REP_DB=WormBase Gene ID /WP=CE02002 /TR=Q09405 /GB=AAC24297.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062896(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062896 NCBI Caenorhabditis elegans K06A1.2 (K06A1.2) mRNA, complete cds. 11/11 None
K06A1.2 ENSEMBL cdna:known chromosome:CEL140:II:6445342:6446081:1 gene:K06A1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007664 8/11 Cross Hyb Matching Probes None
GENEFINDER00000007673 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6445338-6446078(+) 99.09 100.0
Public Domain and Genome References
Gene Title
Ensembl K06A1.2
Entrez Gene 187044 Entrez gene
SwissProt Q09405 EMBL-EBI
WormBase CE02002 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24297 Hypothetical protein K06A1.2 [Caenorhabditis elegans] ref|NP_495297.1| K06A1.2 [Caenorhabditis elegans] 9.0E-96
blast CAE59323 Hypothetical protein CBG02665 [Caenorhabditis briggsae] 4.0E-72
Sequence
Target Sequence 
>C. ELEGANS:180008_AT
ttgtcatccaaacatacctgctcagtaaattgaagcctaatattgatccaattccacgaa
tcagcgaggagaccccaagccaggtggctccaactattctgagtactcaatctggtgaga
cgagaatcgagagcgagtttaatgaaatgacatatatccatccgagaccattccatgtcc
cacggcttggattgtctatattgaatgtgaagaacaataggaacaatgattggttggcgt
tgagagctctgttgtcaaccactggcttctacaagttgtatccatcgaagtttttgattc
ctcccggcaaagaaatttcgatagaagtcgagcaatgtactagagctgaatctccaacgt
tgaatcacaatattcttattgaatggtttcctcttgactcgactccaccaacgggtgact
tgcaacgtctttggagcaaaccatatttggttccacaatcgcattggcaatatttcgttc
ttccggttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTCATCCAAACATACCTGCTCAG 275 705 20 Antisense
CCAGGTGGCTCCAACTATTCTGAGT 180 273 99 Antisense
GACATATATCCATCCGAGACCATTC 297 371 168 Antisense
ATGTCCCACGGCTTGGATTGTCTAT 484 47 194 Antisense
GGTTGGCGTTGAGAGCTCTGTTGTC 96 507 251 Antisense
CTGTTGTCAACCACTGGCTTCTACA 148 239 268 Antisense
CATCGAAGTTTTTGATTCCTCCCGG 7 211 302 Antisense
ATTGAATGGTTTCCTCTTGACTCGA 563 5 397 Antisense
TCGACTCCACCAACGGGTGACTTGC 263 595 418 Antisense
GGTGACTTGCAACGTCTTTGGAGCA 307 501 433 Antisense
TGGCAATATTTCGTTCTTCCGGTTT 416 545 484 Antisense
Sequence Source Affymetrix Proprietary Database