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[180007_at]

Description T07D3.1 /REP_DB=WormBase Gene ID /WP=CE13355 /TR=O16727 /GB=AAB66190.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 37.2
(3)
A 		12.8
(-2)
A 		11.5
(-2.3)
A 		8
(-3)
A 		29
B 28.9
(1.9)
A 		33.6
(3)
A 		28
(1.7)
A 		7.9
(-3)
A 		26
C 32.2
(0.5)
A 		45
(3)
A 		13.7
(-3)
A 		41.2
(2.3)
A 		31
avr 32.8
(3) 		30.5
(2.1) 		17.7
(-3) 		19
(-2.5) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 9.6
(-2.2)
A 		6.1
(-2.8)
A 		38.9
(3)
A 		21.2
(-0.1)
A 		5.1
(-3)
A 		33.8
(2.1)
A 		34
B 6.3
(-2.8)
A 		6.8
(-2.7)
A 		18
(-0.7)
A 		38.7
(3)
A 		18.1
(-0.7)
A 		5.3
(-3)
A 		33
C 15.8
(0.5)
A 		23.8
(3)
A 		7.5
(-2.1)
A 		4.5
(-3)
A 		6.2
(-2.5)
A 		17.7
(1.1)
A 		19
avr 10.6
(-2.6) 		12.2
(-1.8) 		21.5
(3) 		21.5
(3) 		9.8
(-3) 		18.9
(1.7) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 13.5
(3)
A 		2.8
(-2.2)
A 		3
(-2.1)
A 		1.2
(-3)
A 		12
B 9.2
(3)
A 		8.3
(2.3)
A 		6.5
(0.8)
A 		1.7
(-3)
A 		8
C 10.7
(1.4)
A 		12.9
(3)
A 		4.8
(-3)
A 		6.9
(-1.4)
A 		8
avr 11.1
(3) 		8
(0.6) 		4.8
(-1.8) 		3.3
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.8
(-2.7)
A 		2.2
(-2.4)
A 		8.5
(3)
A 		5.4
(0.3)
A 		1.5
(-3)
A 		8.2
(2.7)
A 		7
B 2.2
(-2.9)
A 		2.2
(-2.9)
A 		4.4
(-1.2)
A 		10.2
(3)
A 		7.3
(0.9)
A 		2
(-3)
A 		8
C 5.9
(1.8)
A 		7.2
(3)
A 		1.9
(-2)
A 		0.9
(-3)
A 		2
(-2)
A 		5.9
(1.8)
A 		6
avr 3.3
(-3) 		3.9
(-1.4) 		4.9
(1.4) 		5.5
(3) 		3.6
(-2.2) 		5.4
(2.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180007_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4125
Sequence Type Exemplar sequence
Representative Public ID T07D3.1 NCBI
Target Description T07D3.1 /REP_DB=WormBase Gene ID /WP=CE13355 /TR=O16727 /GB=AAB66190.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061444(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061444 NCBI Caenorhabditis elegans T07D3.1 (T07D3.1) mRNA, complete cds. 11/11 None
T07D3.1 ENSEMBL cdna:known chromosome:CEL140:II:904452:906045:1 gene:T07D3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:904429-906044(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07D3.1
Entrez Gene 188221 Entrez gene
SwissProt O16727 EMBL-EBI
WormBase CE36192 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66190 Hypothetical protein T07D3.1 [Caenorhabditis elegans] ref|NP_493845.2| T07D3.1 [Caenorhabditis elegans] 1.0E-156
blast NP_508309 C36C9.3 [Caenorhabditis elegans] gb|AAC67423.1| Hypothetical protein C36C9.3 [Caenorhabditis elegans] 2.0E-60
blast AAB70960 Hypothetical protein C08E3.7 [Caenorhabditis elegans] ref|NP_494012.1| C08E3.7 [Caenorhabditis elegans] 2.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.6E-38
Sequence
Target Sequence 
>C. ELEGANS:180007_AT
aagagttgcgcgaccaatgctttactgaaacctcgagcatgctcaactccacgagaagca
ttcgaacaaatgcctttactgcaagctatctctcgttacgcgaattttcttcactgttgg
aaatcttccctgctggagaattgagagcgcttcaattttattcgcacactttcgaccgcc
aggaacacagaggaagcgagtgggagcatcttgtgaacatggatcaatggaggatggcta
agacgtttgatggtggattccgtgtgaaagtcgcacttgaacacttatcacactttagac
gaattgatgtcttgctagtgaagttcaccggagcagatgccgtcaaacttcgtgatatga
ttgaaggatcgaccaatttcgaatctgcagtactcacttgcgaaggaatgaataaacgtc
gtgtcgcaagagctttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAGTTGCGCGACCAATGCTTTAC 67 155 497 Antisense
CTTTACTGAAACCTCGAGCATGCTC 419 223 516 Antisense
TACTGCAAGCTATCTCTCGTTACGC 274 647 573 Antisense
GTTACGCGAATTTTCTTCACTGTTG 257 447 591 Antisense
CACTGTTGGAAATCTTCCCTGCTGG 521 197 608 Antisense
GCTTCAATTTTATTCGCACACTTTC 268 305 645 Antisense
TTTCGACCGCCAGGAACACAGAGGA 427 667 666 Antisense
GCGAGTGGGAGCATCTTGTGAACAT 213 291 692 Antisense
AGTTCACCGGAGCAGATGCCGTCAA 280 63 818 Antisense
GAATCTGCAGTACTCACTTGCGAAG 346 329 877 Antisense
TAAACGTCGTGTCGCAAGAGCTTTC 258 637 909 Antisense
Sequence Source Affymetrix Proprietary Database