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[180006_s_at]

Description C08E3.4 /REP_DB=WormBase Gene ID /WP=CE08007 /TR=O17194 /GB=AAB70965.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 02      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 3.7
(-3)
A 		2.2
(-3)
A 		6.4
(-2.9)
A 		240.8
(3)
P 		239
B 15.8
(-2.9)
A 		15.6
(-2.9)
A 		11.8
(-3)
A 		189.4
(3)
P 		178
C 10.2
(-2.8)
A 		3.2
(-3)
A 		2.5
(-3)
A 		245.9
(3)
P 		243
avr 9.9
(-2.9) 		7
(-3) 		6.9
(-3) 		225.4
(3) 		219

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 4.4
(-2.7)
A 		6.2
(-2.4)
A 		23
(-0.2)
A 		47.8
(3)
A 		40.9
(2.1)
A 		2
(-3)
A 		46
B 14.8
(-1.5)
A 		3.6
(-3)
A 		23.6
(-0.4)
A 		40.8
(1.9)
A 		49.1
(3)
A 		30.1
(0.5)
A 		46
C 2.9
(-2.9)
A 		33.5
(1)
A 		4.5
(-2.7)
A 		49.4
(3)
A 		17.5
(-1)
A 		2.1
(-3)
A 		47
avr 7.4
(-3) 		14.4
(-1.9) 		17
(-1.5) 		46
(3) 		35.8
(1.4) 		11.4
(-2.4) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 1.4
(-2.8)
A 		0.5
(-3)
A 		1.7
(-2.8)
A 		35.3
(3)
P 		35
B 5
(-2.6)
A 		3.9
(-2.8)
A 		2.7
(-3)
A 		40.4
(3)
P 		38
C 3.4
(-2.6)
A 		0.9
(-3)
A 		0.9
(-3)
A 		41.5
(3)
P 		41
avr 3.3
(-2.8) 		1.8
(-3) 		1.8
(-3) 		39.1
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 0.8
(-2.8)
A 		2.2
(-2.1)
A 		5
(-0.7)
A 		12.1
(2.9)
A 		12.3
(3)
A 		0.5
(-3)
A 		12
B 5.1
(-1.8)
A 		1.2
(-3)
A 		5.7
(-1.6)
A 		10.8
(0.1)
A 		20
(3)
A 		11.2
(0.2)
A 		19
C 1.1
(-2.7)
A 		10.2
(3)
A 		1.1
(-2.7)
A 		9.9
(2.8)
A 		5.7
(0.2)
A 		0.7
(-3)
A 		10
avr 2.3
(-3) 		4.5
(-1.7) 		3.9
(-2.1) 		10.9
(2) 		12.7
(3) 		4.1
(-2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180006_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4121
Sequence Type Exemplar sequence
Representative Public ID C08E3.4 NCBI
Target Description C08E3.4 /REP_DB=WormBase Gene ID /WP=CE08007 /TR=O17194 /GB=AAB70965.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061607(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061607 NCBI Caenorhabditis elegans C08E3.4 (C08E3.4) mRNA, complete cds. 11/11 None
SNAP00000042044 ENSEMBL cdna:SNAP chromosome:CEL140:II:1606599:1607234:-1 9/11 None
C08E3.4 ENSEMBL cdna:known chromosome:CEL140:II:1606594:1607610:-1 gene:C08E3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1606597-1607606(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08E3.4
Entrez Gene 173534 Entrez gene
SwissProt O17194 EMBL-EBI
WormBase CE32119 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70965 Hypothetical protein C08E3.4 [Caenorhabditis elegans] ref|NP_494008.2| C08E3.4 [Caenorhabditis elegans] 1.0E-109
blast AAB70966 Hypothetical protein C08E3.6 [Caenorhabditis elegans] ref|NP_494010.1| C08E3.6 [Caenorhabditis elegans] 3.0E-68
blast AAB70960 Hypothetical protein C08E3.7 [Caenorhabditis elegans] ref|NP_494012.1| C08E3.7 [Caenorhabditis elegans] 1.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.2E-39
Sequence
Target Sequence 
>C. ELEGANS:180006_S_AT
gttgctctttgccaaagtgagctcactaaccgtacatgtattctctacgaagttctcgac
aaaaaatcaattaaagagtctttcgacaatttttgtaggaaaaaaaaatcccgcacaaag
ttcattgccggtgttgggaaatctcttagatcggcgaagaacttgacatcaaaaactgtg
caaacccaattcgttgcatatccagaacttgcccaactgttgcccattttccctgcggaa
agactgaaaaaacttatactgaatggattggacggtcaagaatacaaacagctaattgat
ttggaccaatggaaacaagctagaatatttcatggatatgctgagaatttaattattcca
attgaaaaattctttcactttgagaggtttgatgttcatctcgcaagattcacagaagca
gatgcactgaggcttcgtgcgatgatcgatagatctgctcactttggttttgctggaatt
tgctgtaattatatgaacaacagtgcactgaaaagaattttcaatgttgagcacgaaaac
ttttatcaaactccagacgaaagaagtttcgatgtgcaatgtcgtcctggtgagatctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCTCTTTGCCAAAGTGAGCTCA 141 439 19 Antisense
GTGAGCTCACTAACCGTACATGTAT 119 483 35 Antisense
ATCCCGCACAAAGTTCATTGCCGGT 169 39 126 Antisense
CATTGCCGGTGTTGGGAAATCTCTT 361 217 141 Antisense
AGATCGGCGAAGAACTTGACATCAA 82 67 166 Antisense
GCAGATGCACTGAGGCTTCGTGCGA 357 311 436 Antisense
ATCGATAGATCTGCTCACTTTGGTT 488 35 463 Antisense
GCTCACTTTGGTTTTGCTGGAATTT 689 301 475 Antisense
GAAAACTTTTATCAAACTCCAGACG 637 353 553 Antisense
GAAGTTTCGATGTGCAATGTCGTCC 690 335 581 Antisense
GCAATGTCGTCCTGGTGAGATCTCC 692 319 594 Antisense
Sequence Source Affymetrix Proprietary Database