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[180004_at]

Description M01G12.7 /REP_DB=WormBase Gene ID /WP=CE18071 /TR=O62313 /GB=CAB04616.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3.5
(-1.8)
A 		9
(3)
A 		2.1
(-3)
A 		6.2
(0.6)
A 		7
B 4.1
(-1.1)
A 		9
(3)
A 		2
(-2.9)
A 		1.9
(-3)
A 		7
C 2.5
(-0.7)
A 		3.9
(3)
A 		3.8
(2.7)
A 		1.6
(-3)
A 		2
avr 3.4
(-2) 		7.3
(3) 		2.6
(-3) 		3.2
(-2.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 7.5
(0)
A 		3.7
(-2)
A 		13.2
(3)
A 		1.8
(-3)
A 		6.6
(-0.5)
A 		7.5
(0)
A 		11
B 2.5
(-1.4)
A 		7.2
(3)
A 		3.1
(-0.8)
A 		6.5
(2.3)
A 		2.8
(-1.1)
A 		0.8
(-3)
A 		6
C 2.4
(-2.4)
A 		12
(3)
A 		6.4
(-0.2)
A 		1.4
(-3)
A 		1.8
(-2.8)
A 		3.6
(-1.8)
A 		11
avr 4.1
(-1.8) 		7.6
(3) 		7.6
(3) 		3.2
(-3) 		3.7
(-2.3) 		4
(-1.9) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.3
(0.2)
A 		2
(3)
A 		0.5
(-3)
A 		0.9
(-1.4)
A 		2
B 1.3
(0)
A 		2.2
(3)
A 		0.5
(-2.7)
A 		0.4
(-3)
A 		2
C 0.8
(0)
A 		1.1
(1.8)
A 		1.3
(3)
A 		0.3
(-3)
A 		1
avr 1.1
(-0.2) 		1.8
(3) 		0.8
(-1.6) 		0.5
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.4
(-0.8)
A 		1.3
(-1)
A 		2.9
(3)
A 		0.5
(-3)
A 		2
(0.8)
A 		1.8
(0.3)
A 		2
B 0.9
(-1.3)
A 		2.4
(3)
A 		0.8
(-1.6)
A 		1.7
(1)
A 		1.1
(-0.7)
A 		0.3
(-3)
A 		2
C 0.9
(-1.9)
A 		3.7
(3)
A 		1.6
(-0.7)
A 		0.3
(-3)
A 		0.6
(-2.5)
A 		1.2
(-1.4)
A 		3
avr 1.1
(-1.9) 		2.5
(3) 		1.8
(0.5) 		0.8
(-3) 		1.2
(-1.6) 		1.1
(-1.9) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180004_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.450
Sequence Type Exemplar sequence
Representative Public ID M01G12.7 NCBI
Target Description M01G12.7 /REP_DB=WormBase Gene ID /WP=CE18071 /TR=O62313 /GB=CAB04616.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060659(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060659 NCBI Caenorhabditis elegans M01G12.7 (M01G12.7) mRNA, complete cds. 11/11 None
SNAP00000024224 ENSEMBL cdna:SNAP chromosome:CEL140:I:12122186:12125208:-1 11/11 None
GENEFINDER00000024238 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12122186:12124412:-1 11/11 None
M01G12.7 ENSEMBL cdna:known chromosome:CEL140:I:12122186:12124412:-1 gene:M01G12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12122116-12124343(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01G12.7
Entrez Gene 187384 Entrez gene
SwissProt O62313 EMBL-EBI
WormBase CE18071 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04616 Hypothetical protein M01G12.7 [Caenorhabditis elegans] ref|NP_493060.1| M01G12.7 [Caenorhabditis elegans] 0.0
blast CAB04619 Hypothetical protein M01G12.14 [Caenorhabditis elegans] ref|NP_493058.1| M01G12.14 [Caenorhabditis elegans] 1.0E-44
blast CAB60385 Hypothetical protein Y47H10A.3 [Caenorhabditis elegans] ref|NP_493054.2| Y47H10A.3 [Caenorhabditis elegans] 1.0E-42
Sequence
Target Sequence 
>C. ELEGANS:180004_AT
tggccgactaacgttctatacgatatcgaaacccggagcagagaagaaattcttgaagaa
gttgctaagagatttgaaggcactgaagaccattggacgattgaggatggacagaagcga
ctgcagtcattctttaatttgatcaaaaactcagtgaaaaaagacagagactgctatgtt
attacaaatgacggaagccagtggaagattgaacaggaccatcagaagttggcaggaacg
ttccgacacgtggtcgagcacattttgaagagtaagggcaagatggatataaatgggaac
atatcgtatcttcctgtacgggaggaatgggagagatccctcatcgtgaagtatctctct
gaaaacaccgagagtgacgagacaaaggcgaagaagatagttgatcgccttggtagtgga
atcggacccgaggttgcagcggtacgttgcattggccaaccaagacatctccaaattgtg
gtgaatagtatttatcaacagagaaggtgcttacgaaatgtacacaaaatgaagacatca
gagttcaacggattttatatcgagcggtttatttcatgggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCCGACTAACGTTCTATACGATA 155 543 766 Antisense
TACGATATCGAAACCCGGAGCAGAG 167 649 784 Antisense
GAAGGCACTGAAGACCATTGGACGA 192 331 841 Antisense
GCGACTGCAGTCATTCTTTAATTTG 601 289 882 Antisense
GGAACGTTCCGACACGTGGTCGAGC 505 525 1000 Antisense
GGGAACATATCGTATCTTCCTGTAC 452 493 1060 Antisense
GATCCCTCATCGTGAAGTATCTCTC 135 417 1100 Antisense
GAAGATAGTTGATCGCCTTGGTAGT 196 333 1158 Antisense
GGAATCGGACCCGAGGTTGCAGCGG 44 533 1183 Antisense
GTTGCAGCGGTACGTTGCATTGGCC 101 437 1198 Antisense
TATCGAGCGGTTTATTTCATGGGAA 5 645 1323 Antisense
Sequence Source Affymetrix Proprietary Database