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[180003_at]

Description C01F4.3 /REP_DB=WormBase Gene ID /WP=CE07799 /TR=O01444 /GB=AAB52434.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 36      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 37.1
(-0.8)
A 		34.7
(-1.1)
A 		19
(-3)
A 		68.3
(3)
A 		49
B 55.4
(0.8)
A 		84.5
(3)
A 		50.6
(0.4)
A 		5.5
(-3)
A 		79
C 52.2
(-3)
A 		65.4
(1.1)
A 		52.2
(-3)
A 		71.5
(3)
A 		19
avr 48.2
(-0.8) 		61.5
(3) 		40.6
(-3) 		48.4
(-0.8) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 10.4
(-2.4)
A 		68.7
(3)
A 		17.8
(-1.7)
A 		6.2
(-2.8)
A 		4.1
(-3)
A 		48.8
(1.2)
A 		65
B 60.2
(3)
A 		40
(0.8)
A 		30.3
(-0.2)
A 		3.9
(-3)
A 		26.4
(-0.6)
A 		4.1
(-3)
A 		56
C 38.6
(-0.3)
A 		76.4
(3)
A 		45.3
(0.3)
A 		9.8
(-2.8)
A 		20.3
(-1.9)
A 		7.6
(-3)
A 		69
avr 36.4
(0.2) 		61.7
(3) 		31.1
(-0.3) 		6.6
(-3) 		16.9
(-1.9) 		20.2
(-1.5) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 13.5
(3)
A 		7.5
(-1.2)
A 		5
(-3)
A 		10
(0.5)
A 		9
B 17.7
(2)
A 		20.9
(3)
A 		11.7
(0.2)
A 		1.2
(-3)
A 		20
C 17.3
(1.7)
A 		18.8
(3)
A 		18.2
(2.5)
A 		12.1
(-3)
A 		7
avr 16.2
(3) 		15.7
(2.6) 		11.6
(-0.3) 		7.8
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.9
(-2.8)
A 		24.4
(3)
A 		3.9
(-2.3)
A 		1.6
(-2.9)
A 		1.3
(-3)
A 		11.9
(-0.2)
A 		23
B 20.9
(3)
A 		13.3
(0.7)
A 		7.4
(-1.1)
A 		1
(-3)
A 		10.7
(-0.1)
A 		1.5
(-2.8)
A 		20
C 14.3
(0.5)
A 		23.3
(3)
A 		11.5
(-0.3)
A 		2
(-3)
A 		6.6
(-1.7)
A 		2.5
(-2.9)
A 		21
avr 12.4
(0.5) 		20.3
(3) 		7.6
(-1.1) 		1.5
(-3) 		6.2
(-1.5) 		5.3
(-1.8) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180003_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1560
Sequence Type Exemplar sequence
Representative Public ID C01F4.3 NCBI
Target Description C01F4.3 /REP_DB=WormBase Gene ID /WP=CE07799 /TR=O01444 /GB=AAB52434.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059064(10), NM_059065(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059064 NCBI Caenorhabditis elegans C01F4.2a (C01F4.2) mRNA, complete cds. 10/11 A 
NM_059065 NCBI Caenorhabditis elegans C01F4.2b (C01F4.2) mRNA, complete cds. 10/11 A 
GENEFINDER00000038083 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4850995:4867826:-1 10/11 None
C01F4.2a ENSEMBL cdna:known chromosome:CEL140:I:4850673:4867823:-1 gene:C01F4.2 10/11 A 
C01F4.2b ENSEMBL cdna:known chromosome:CEL140:I:4850976:4867826:-1 gene:C01F4.2 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4864502-4867823(-) 100.0 100.0
Public Domain and Genome References
Ensembl C01F4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52434 Hypothetical protein C01F4.2a [Caenorhabditis elegans] ref|NP_491465.2| C01F4.2a [Caenorhabditis elegans] 0.0
blast CAE60348 Hypothetical protein CBG03944 [Caenorhabditis briggsae] 0.0
blast AAO38678 Hypothetical protein C01F4.2b [Caenorhabditis elegans] ref|NP_491466.2| C01F4.2b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000198 EMBL-EBI RhoGAP domain 1.3E-58
Pfam IPR000198 EMBL-EBI RhoGAP domain 1.3E-58
Pfam IPR000198 EMBL-EBI RhoGAP domain 5.1E-30
Sequence
Target Sequence 
>C. ELEGANS:180003_AT
tcgtctctatcagcctgtggtggaccctcatcgtcaacgacaaccgcccatccatcatct
tcaccaaaatcaaaaacatcggtgacgtcatcacgaagtgatacagatagtgtgatacct
gagcataaaccttcatcggcatcttcattttcaattggacggcttctttttaggagtagt
ggaagttcgaatagtacaaaacgagattctgtggactccggtaaagacgatgaaacgggg
cgctcacctgcaacaagtaggccaggatcaccaaatcccggtggagataagtcaccgcaa
atgtcaacttccaggcggggcgattcatcaattgaaaacattgttttttgcagatcaatt
cgaaaaagtcaatggcgtcttttcaagcatcgaacgttttttggctctcagcgaagcagt
atgaagaaaaatcagttacaactgccacgtctaacactacgacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTCTCTATCAGCCTGTGGTGGAC 217 603 43 Antisense
ACCTGAGCATAAACCTTCATCGGCA 1 89 159 Antisense
TTCATCGGCATCTTCATTTTCAATT 458 687 174 Antisense
GGACGGCTTCTTTTTAGGAGTAGTG 221 523 199 Antisense
GGCGCTCACCTGCAACAAGTAGGCC 677 541 281 Antisense
GCCAGGATCACCAAATCCCGGTGGA 558 279 303 Antisense
TCACCGCAAATGTCAACTTCCAGGC 305 625 334 Antisense
TTCCAGGCGGGGCGATTCATCAATT 551 695 351 Antisense
GTCAATGGCGTCTTTTCAAGCATCG 566 463 410 Antisense
TCGAACGTTTTTTGGCTCTCAGCGA 41 601 432 Antisense
ACTGCCACGTCTAACACTACGACAT 92 99 483 Antisense
Sequence Source Affymetrix Proprietary Database