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[180002_at]

Description T02G5.1 /REP_DB=WormBase Gene ID /WP=CE04853 /TR=Q22110 /GB=AAA82407.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 20      6grp_total > 23      4grp_total > 37      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 75.7
(1)
P 		93.2
(2.3)
P 		23.1
(-3)
A 		102.2
(3)
A 		79
B 98.3
(3)
P 		48.9
(-0.6)
A 		15.3
(-3)
A 		56.7
(-0)
A 		83
C 90.3
(3)
P 		72
(1)
A 		35
(-3)
A 		63.2
(0.1)
P 		55
avr 88.1
(3) 		71.4
(1.4) 		24.5
(-3) 		74
(1.7) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 51.2
(-1.5)
A 		73.7
(0.7)
P 		96.1
(3)
P 		73
(0.7)
P 		54.5
(-1.2)
P 		36.4
(-3)
A 		60
B 65.9
(1.1)
P 		78.6
(3)
P 		68.8
(1.6)
M 		38.7
(-2.9)
A 		37.8
(-3)
A 		47
(-1.6)
M 		41
C 78.5
(3)
P 		57.5
(0.4)
P 		44.2
(-1.2)
P 		63.7
(1.2)
P 		29.7
(-3)
A 		57.9
(0.5)
P 		49
avr 65.2
(2) 		69.9
(3) 		69.7
(3) 		58.5
(0.7) 		40.7
(-3) 		47.1
(-1.7) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 27.6
(3)
P 		20.2
(0.9)
P 		6.1
(-3)
A 		15
(-0.5)
A 		22
B 31.3
(3)
P 		12.1
(-1.1)
A 		3.5
(-3)
A 		12.1
(-1.1)
A 		28
C 29.9
(3)
P 		20.7
(0.1)
A 		12.2
(-2.5)
A 		10.7
(-3)
P 		19
avr 29.6
(3) 		17.7
(-0.2) 		7.3
(-3) 		12.6
(-1.6) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 9.4
(-2.8)
A 		26.2
(3)
P 		20.9
(1.2)
P 		18.5
(0.3)
P 		16.5
(-0.4)
P 		8.9
(-3)
A 		17
B 22.9
(1.8)
P 		26.2
(3)
P 		16.7
(-0.6)
M 		10.3
(-3)
A 		15.3
(-1.1)
A 		17.5
(-0.3)
M 		16
C 29.1
(3)
P 		17.5
(-0.6)
P 		11.3
(-2.5)
P 		12.8
(-2)
P 		9.6
(-3)
A 		19.4
(0)
P 		20
avr 20.5
(1.2) 		23.3
(3) 		16.3
(-1.4) 		13.9
(-2.9) 		13.8
(-3) 		15.3
(-2.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180002_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5637
Sequence Type Exemplar sequence
Representative Public ID T02G5.1 NCBI
Target Description T02G5.1 /REP_DB=WormBase Gene ID /WP=CE04853 /TR=Q22110 /GB=AAA82407.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063064(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063064 NCBI Caenorhabditis elegans T02G5.1 (T02G5.1) mRNA, complete cds. 11/11 None
SNAP00000014293 ENSEMBL cdna:SNAP chromosome:CEL140:II:7096797:7099214:1 11/11 None
GENEFINDER00000014303 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7098715:7099214:1 11/11 None
T02G5.1 ENSEMBL cdna:known chromosome:CEL140:II:7098761:7099214:1 gene:T02G5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7098756-7099210(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02G5.1
Entrez Gene 187989 Entrez gene
SwissProt Q22110 EMBL-EBI
WormBase CE04853 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_495465 T02G5.1 [Caenorhabditis elegans] gb|AAA82407.1| Hypothetical protein T02G5.1 [Caenorhabditis elegans] 9.0E-62
blast NP_495465 T02G5.1 [Caenorhabditis elegans] gb|AAA82407.1| Hypothetical protein T02G5.1 [Caenorhabditis elegans] 1.0E-57
blast NP_495465 T02G5.1 [Caenorhabditis elegans] gb|AAA82407.1| Hypothetical protein T02G5.1 [Caenorhabditis elegans] 3.0E-57
blast CAE66023 Hypothetical protein CBG11217 [Caenorhabditis briggsae] 8.0E-46
blast CAE66023 Hypothetical protein CBG11217 [Caenorhabditis briggsae] 2.0E-45
blast CAE66023 Hypothetical protein CBG11217 [Caenorhabditis briggsae] 4.0E-45
Sequence
Target Sequence 
>C. ELEGANS:180002_AT
aatctttaccatctcggcgaggaggatgatcgtttcgaaattcgtcctcatttgttcaaa
accgaatattttggactactcatagctagaaaagaagataaatatgcaaaggagacttat
cgaattcagctgagctctcgggaacatttgaaaattaattttcctcatcaagttgacagt
ctgattagacttgcagattctgacagtgaatgggtgctcgtggcatcctatacagtcaca
gatccagaagctcaacttgtttatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCTTTACCATCTCGGCGAGGAGG 123 169 43 Antisense
GGATGATCGTTTCGAAATTCGTCCT 514 511 66 Antisense
ATTCGTCCTCATTTGTTCAAAACCG 585 9 82 Antisense
AAACCGAATATTTTGGACTACTCAT 486 123 101 Antisense
GAGACTTATCGAATTCAGCTGAGCT 657 393 154 Antisense
TCAGCTGAGCTCTCGGGAACATTTG 378 623 168 Antisense
TTTTCCTCATCAAGTTGACAGTCTG 664 675 201 Antisense
CTGATTAGACTTGCAGATTCTGACA 547 237 223 Antisense
TGAATGGGTGCTCGTGGCATCCTAT 581 575 249 Antisense
GGCATCCTATACAGTCACAGATCCA 165 537 264 Antisense
ATCCAGAAGCTCAACTTGTTTATAC 684 39 284 Antisense
Sequence Source Affymetrix Proprietary Database