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[180001_s_at]

Description C27F2.1 /REP_DB=WormBase Gene ID /WP=CE26874 /TR=Q18263 /GB=AAA81428.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 15      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 29.9
(3)
M 		7.1
(-2.7)
A 		6.1
(-3)
A 		9.8
(-2.1)
A 		24
B 22.1
(-0.5)
A 		3.5
(-3)
A 		16.8
(-1.2)
A 		47.7
(3)
M 		44
C 67.1
(2.4)
A 		5
(-2.9)
A 		3.4
(-3)
A 		73.9
(3)
A 		71
avr 39.7
(2.4) 		5.2
(-3) 		8.8
(-2.4) 		43.8
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 20.7
(0.9)
A 		3.7
(-3)
A 		29.9
(3)
A 		10.3
(-1.5)
A 		4.3
(-2.9)
A 		13.9
(-0.7)
A 		26
B 36.9
(3)
A 		27.4
(1.4)
A 		20
(0.1)
A 		5.8
(-2.3)
A 		1.8
(-3)
A 		4.9
(-2.5)
A 		35
C 13.5
(-0.3)
A 		20.9
(2.3)
A 		22.9
(3)
A 		5.6
(-3)
A 		7.4
(-2.4)
A 		11.3
(-1)
A 		17
avr 23.7
(2.8) 		17.3
(0.9) 		24.3
(3) 		7.2
(-2.2) 		4.5
(-3) 		10
(-1.3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 10.9
(3)
M 		1.5
(-2.9)
A 		1.6
(-2.9)
A 		1.4
(-3)
A 		10
B 7.1
(1)
A 		0.9
(-3)
A 		3.9
(-1.1)
A 		10.2
(3)
M 		9
C 22.2
(3)
A 		1.4
(-2.9)
A 		1.2
(-3)
A 		12.5
(0.2)
A 		21
avr 13.4
(3) 		1.3
(-3) 		2.2
(-2.6) 		8
(0.3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 3.8
(-0.1)
A 		1.3
(-3)
A 		6.5
(3)
A 		2.6
(-1.5)
A 		1.3
(-3)
A 		3.4
(-0.6)
A 		5
B 12.8
(3)
A 		9.1
(1.2)
A 		4.9
(-0.9)
A 		1.5
(-2.6)
A 		0.7
(-3)
A 		1.8
(-2.5)
A 		12
C 5
(1.4)
A 		6.4
(3)
A 		5.8
(2.3)
A 		1.1
(-3)
A 		2.4
(-1.5)
A 		3.8
(0.1)
A 		5
avr 7.2
(3) 		5.6
(1.3) 		5.7
(1.4) 		1.7
(-2.8) 		1.5
(-3) 		3
(-1.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180001_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7233
Sequence Type Exemplar sequence
Representative Public ID C27F2.1 NCBI
Target Description C27F2.1 /REP_DB=WormBase Gene ID /WP=CE26874 /TR=Q18263 /GB=AAA81428.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065657(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065657 NCBI Caenorhabditis elegans C27F2.1 (C27F2.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000001023 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4987230:4991357:1 11/11 None
C27F2.1 ENSEMBL cdna:known chromosome:CEL140:III:4987230:4991357:1 gene:C27F2.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001017 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4987228-4991356(+) 89.04 100.0
Public Domain and Genome References
Gene Title
Ensembl C27F2.1
Entrez Gene 175676 Entrez gene
WormBase CE38940 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498058 C27F2.1 [Caenorhabditis elegans] 0.0
blast AAA81428 Hypothetical protein C27F2.1 [Caenorhabditis elegans] 0.0
blast CAE70090 Hypothetical protein CBG16532 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180001_S_AT
atccatctggcttttatacgattcacaactcaaatatcataacatactgggatttgggat
ttaagttatctccaaagagtgtagatcatcggacggattctgttcaagtacttgcatctg
acacgtggctttcggaaaacgctaaaattggttatatggcttttggattaagcaatggag
attccgaggttcatgttctagaagatcccgcgcggaagaatcaaaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCATCTGGCTTTTATACGATTCA 471 39 1706 Antisense
ATACGATTCACAACTCAAATATCAT 414 23 1721 Antisense
GGGATTTAAGTTATCTCCAAAGAGT 648 495 1761 Antisense
CCAAAGAGTGTAGATCATCGGACGG 525 273 1777 Antisense
GTTCAAGTACTTGCATCTGACACGT 257 445 1807 Antisense
TGCATCTGACACGTGGCTTTCGGAA 248 579 1818 Antisense
GACACGTGGCTTTCGGAAAACGCTA 211 359 1825 Antisense
ATTGGTTATATGGCTTTTGGATTAA 383 3 1852 Antisense
GGAGATTCCGAGGTTCATGTTCTAG 628 517 1882 Antisense
GTTCATGTTCTAGAAGATCCCGCGC 223 443 1894 Antisense
GATCCCGCGCGGAAGAATCAAAACG 635 415 1909 Antisense
Sequence Source Affymetrix Proprietary Database