[Home] | [Total List]

[179999_s_at]

Description F20B4.4 /REP_DB=WormBase Gene ID /WP=CE07103 /TR=Q19621 /GB=AAC48145.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 44      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 121.6
(3)
A 		75.2
(-2.7)
A 		103.4
(0.8)
A 		72.9
(-3)
A 		49
B 86.9
(-1.4)
A 		124.6
(3)
A 		85.5
(-1.5)
A 		72.6
(-3)
A 		52
C 73.5
(-1.9)
A 		147.8
(3)
A 		57.5
(-3)
A 		85.5
(-1.1)
A 		90
avr 94
(-0.4) 		115.9
(3) 		82.1
(-2.2) 		77
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 106.4
(0.4)
A 		46.2
(-3)
A 		96.5
(-0.1)
A 		64.7
(-1.9)
A 		151.2
(3)
A 		102.9
(0.2)
A 		105
B 73.4
(-3)
A 		110.5
(1.6)
A 		75.4
(-2.8)
A 		94.5
(-0.4)
A 		121.4
(3)
M 		85.2
(-1.5)
A 		48
C 58
(-0.5)
A 		108.1
(3)
A 		89.2
(1.7)
A 		23.4
(-3)
A 		62.6
(-0.2)
A 		92.9
(1.9)
A 		85
avr 79.3
(-0.8) 		88.3
(0.2) 		87
(0.1) 		60.9
(-3) 		111.7
(3) 		93.7
(0.9) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 44.3
(3)
A 		16.3
(-2)
A 		27
(-0.1)
A 		10.7
(-3)
A 		34
B 27.7
(1.8)
A 		30.8
(3)
A 		19.8
(-1.3)
A 		15.5
(-3)
A 		15
C 24.3
(-0.9)
A 		42.5
(3)
A 		20
(-1.8)
A 		14.4
(-3)
A 		28
avr 32.1
(3) 		29.9
(2.3) 		22.3
(-0.2) 		13.5
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 19.6
(-2.3)
A 		16.4
(-3)
A 		21
(-2.1)
A 		16.4
(-3)
A 		45.6
(3)
A 		25.1
(-1.2)
A 		29
B 25.5
(-1.6)
A 		36.8
(0.6)
A 		18.3
(-3)
A 		25
(-1.7)
A 		49.3
(3)
M 		31.8
(-0.4)
A 		31
C 21.5
(0.6)
A 		33
(3)
A 		22.7
(0.8)
A 		4.7
(-3)
A 		20.3
(0.3)
A 		31.1
(2.6)
A 		28
avr 22.2
(-1.2) 		28.7
(0.5) 		20.7
(-1.6) 		15.4
(-3) 		38.4
(3) 		29.3
(0.6) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179999_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17673
Sequence Type Exemplar sequence
Representative Public ID F20B4.4 NCBI
Target Description F20B4.4 /REP_DB=WormBase Gene ID /WP=CE07103 /TR=Q19621 /GB=AAC48145.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069296(11), NM_078459(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069296 NCBI Caenorhabditis elegans T05A1.4 (T05A1.4) mRNA, complete cds. 11/11 A 
NM_078459 NCBI Caenorhabditis elegans F20B4.4 (F20B4.4) mRNA, complete cds. 11/11 A 
SNAP00000033938 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9551741:9555983:-1 9/11 None
GENEFINDER00000033947 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9548450:9555983:-1 11/11 None
GENEFINDER00000007939 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17706788:17707420:-1 11/11 None
T05A1.4 ENSEMBL cdna:known chromosome:CEL140:IV:9548450:9555983:-1 gene:T05A1.4 11/11 A 
F20B4.4 ENSEMBL cdna:known chromosome:CEL140:X:17706788:17707420:-1 gene:F20B4.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038814 8/11 Cross Hyb Matching Probes None
GENEFINDER00000038833 4/11 Cross Hyb Matching Probes None
ZK1025.1 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title

Ensembl T05A1.4
F20B4.4
Entrez Gene 184710 Entrez gene
188076 Entrez gene
SwissProt Q19621 EMBL-EBI
Q22184 EMBL-EBI
WormBase CE07103 Wormbase
CE03624 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6310 DNA recombination inferred from electronic annotation QuickGO AmiGO
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92477 Hypothetical protein T05A1.4 [Caenorhabditis elegans] ref|NP_501697.1| T05A1.4 [Caenorhabditis elegans] 0.0
blast NP_508646 T14G12.5 [Caenorhabditis elegans] gb|AAA82437.1| Hypothetical protein T14G12.5 [Caenorhabditis elegans] 0.0
blast T27790 hypothetical protein ZK228.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 2.0E-18
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 7.3E-76
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 2.0E-18
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 7.3E-76
Sequence
Target Sequence 
>C. ELEGANS:179999_S_AT
tccaaatcttcaaaaggtctcccggaagtcgacaccccgcatgttgacaacccagaggca
cccgaggccacccttcaaggtgactcatcggctaccgctcaaggtaacccctcaggcagg
caatcaaaccgacgctcgagacgtggtcgcccacaccacttgagatcgccagccgccact
atcaagggtaccatcacccgcatcgtcaataagacgcgacagtttcatcaggaagcgtct
agaacgatgctggaacattttggttgcaacccgaacgtttctcctcccatcgagaacgct
atcctccgcaatgcgaatcaagttctcatcaaacttcggcattacgcggaggagttggag
aacctacgccaattcgtgaacgacaagttccaagaaccggcactgcgagattcccccaat
agggacacctatcacaaagaggtggaagctcatcttgcaggactccaacctcaagccctc
ctcaacgaggcaaaacgtgacatcgtcatgttggaaagagagttgtcatctctcggctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAAATCTTCAAAAGGTCTCCCGG 70 589 25 Antisense
TCAAAAGGTCTCCCGGAAGTCGACA 568 625 34 Antisense
CGAGGCCACCCTTCAAGGTGACTCA 628 247 87 Antisense
TCAAACCGACGCTCGAGACGTGGTC 67 629 148 Antisense
AAACCGACGCTCGAGACGTGGTCGC 672 123 150 Antisense
CCGCCACTATCAAGGGTACCATCAC 645 261 197 Antisense
TATCAAGGGTACCATCACCCGCATC 40 659 204 Antisense
CCATCACCCGCATCGTCAATAAGAC 362 271 215 Antisense
TCACCCGCATCGTCAATAAGACGCG 441 625 218 Antisense
GACATCGTCATGTTGGAAAGAGAGT 179 369 523 Antisense
AAAGAGAGTTGTCATCTCTCGGCTT 74 123 539 Antisense
Sequence Source Affymetrix Proprietary Database