[Home] | [Total List]

[179997_s_at]

Description F09A5.4A /REP_DB=WormBase Gene ID /WP=CE18579 /TR=Q19237 /GB=CAA93648.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 50      6grp_total > 18      4grp_total > 21      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 479
1 2 3 4 range
A 674.3
(1.6)
P 		531.9
(-0.8)
P 		396.6
(-3)
P 		757.5
(3)
P 		361
B 722.2
(1.4)
P 		524.8
(-1.1)
P 		372.1
(-3)
P 		851.5
(3)
P 		479
C 661.5
(1.6)
P 		531.4
(-2.1)
P 		497.9
(-3)
P 		712.4
(3)
P 		215
avr 686
(1.5) 		529.4
(-1.2) 		422.2
(-3) 		773.8
(3) 		352

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 655
1 2 3 4 5 6 range
A 564.1
(0.8)
P 		667.7
(3)
P 		381.2
(-3)
P 		480.3
(-0.9)
P 		527.1
(0.1)
P 		492.9
(-0.7)
P 		287
B 637
(3)
P 		493.2
(-0.4)
P 		429.8
(-2)
P 		414.5
(-2.3)
P 		507.7
(-0.1)
P 		386.2
(-3)
P 		251
C 1029.1
(3)
P 		483.1
(-2)
P 		547.5
(-1.4)
P 		456.2
(-2.3)
P 		585.5
(-1.1)
P 		374.6
(-3)
P 		655
avr 743.4
(3) 		548
(-0.6) 		452.8
(-2.4) 		450.3
(-2.4) 		540.1
(-0.7) 		417.9
(-3) 		326
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 245.5
(3)
P 		115.5
(-2.5)
P 		103.7
(-3)
P 		110.9
(-2.7)
P 		142
B 230.3
(3)
P 		129.6
(-1.2)
P 		86.2
(-3)
P 		181.5
(1)
P 		144
C 219
(3)
P 		152.8
(-1)
P 		173.5
(0.2)
P 		120.1
(-3)
P 		99
avr 231.6
(3) 		132.6
(-2.4) 		121.1
(-3) 		137.5
(-2.1) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 299
1 2 3 4 5 6 range
A 104
(-2.2)
P 		237.5
(3)
P 		83
(-3)
P 		121.8
(-1.5)
P 		159.1
(-0)
P 		120
(-1.6)
P 		155
B 221.7
(3)
P 		164.2
(0.1)
P 		104.4
(-3)
P 		109.8
(-2.7)
P 		206.3
(2.2)
P 		144
(-1)
P 		117
C 381.5
(3)
P 		147.4
(-1.8)
P 		139.4
(-2)
P 		91.7
(-3)
P 		189.5
(-1)
P 		125.4
(-2.3)
P 		290
avr 235.7
(3) 		183
(0.5) 		108.9
(-2.9) 		107.8
(-3) 		185
(0.6) 		129.8
(-2) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179997_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18024
Sequence Type Exemplar sequence
Representative Public ID F09A5.4A NCBI
Target Description F09A5.4A /REP_DB=WormBase Gene ID /WP=CE18579 /TR=Q19237 /GB=CAA93648.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077784(11), NM_077783(11), NM_171788(11), NM_171789(11), NM_077785(11), NR_002420(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077784 NCBI Caenorhabditis elegans F09A5.4a (F09A5.4) mRNA, complete cds. 11/11 None
NM_077783 NCBI Caenorhabditis elegans F09A5.4c (F09A5.4) mRNA, complete cds. 11/11 None
NM_171788 NCBI Caenorhabditis elegans F09A5.4e (F09A5.4) mRNA, complete cds. 11/11 None
NM_171789 NCBI Caenorhabditis elegans F09A5.4d (F09A5.4) mRNA, complete cds. 11/11 None
NM_077785 NCBI Caenorhabditis elegans F09A5.4b (F09A5.4) mRNA, complete cds. 11/11 None
NR_002420 NCBI Caenorhabditis elegans F09A5.4, miscRNA. 11/11 None
SNAP00000018919 ENSEMBL cdna:SNAP chromosome:CEL140:X:13153362:13155579:-1 11/11 None
GENEFINDER00000018922 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13153362:13155397:-1 11/11 None
F09A5.4a ENSEMBL cdna:known chromosome:CEL140:X:13152746:13158412:-1 gene:F09A5.4 11/11 None
F09A5.4b.1 ENSEMBL cdna:known chromosome:CEL140:X:13153362:13155727:-1 gene:F09A5.4 11/11 None
F09A5.4b.2 ENSEMBL cdna:known chromosome:CEL140:X:13153362:13155728:-1 gene:F09A5.4 11/11 None
F09A5.4e ENSEMBL cdna:known chromosome:CEL140:X:13153362:13161395:-1 gene:F09A5.4 11/11 None
F09A5.4c ENSEMBL cdna:known chromosome:CEL140:X:13153362:13169995:-1 gene:F09A5.4 11/11 None
F09A5.4d ENSEMBL cdna:known chromosome:CEL140:X:13153362:13157378:-1 gene:F09A5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13153361-13158390(-) 100.0 100.0
Public Domain and Genome References
Ensembl F09A5.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35816 Hypothetical protein F09A5.4c [Caenorhabditis elegans] emb|CAC35811.1| Hypothetical protein F09A5.4c [Caenorhabditis elegans] ref|NP_510184.1| F09A5.4c [Caenorhabditis elegans] 0.0
blast CAA93647 Hypothetical protein F09A5.4b [Caenorhabditis elegans] ref|NP_510186.1| F09A5.4b [Caenorhabditis elegans] 0.0
blast CAD44118 Hypothetical protein F09A5.4e [Caenorhabditis elegans] ref|NP_741915.1| F09A5.4e [Caenorhabditis elegans] 1.0E-173
blast CAA93647 Hypothetical protein F09A5.4b [Caenorhabditis elegans] ref|NP_510186.1| F09A5.4b [Caenorhabditis elegans] 1.0E-164
blast CAA93648 Hypothetical protein F09A5.4a [Caenorhabditis elegans] ref|NP_510185.1| F09A5.4a [Caenorhabditis elegans] 1.0E-160
Protein Domains
Database ID Description E-Value
Pfam IPR005301 EMBL-EBI Mob1/phocein family 9.6E-102
Pfam IPR005301 EMBL-EBI Mob1/phocein family 9.6E-102
Pfam IPR005301 EMBL-EBI Mob1/phocein family 9.6E-102
Pfam IPR005301 EMBL-EBI Mob1/phocein family 9.6E-102
Pfam IPR005301 EMBL-EBI Mob1/phocein family 9.6E-102
Pfam IPR005301 EMBL-EBI Mob1/phocein family 9.6E-102
Pfam IPR005301 EMBL-EBI Mob1/phocein family 9.6E-102
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741916.1 1 5-23
F09A5.4d 1 5-23
Sequence
Target Sequence 
>C. ELEGANS:179997_S_AT
ctcacaacgttctcggacttttcgagcatgtaaacgctttgtgtggaacgttatcagagg
tgtgcacccaacaatcgtgccctcacatgagctttccgggcacgagcaaagcaatttaca
cagacgaacgtggcaagcggcaggtgtatccagcggtgcagtacattgattgtgttatca
cacagtgcgagtcgatgagccgacaagaggagatttttccaactaaatatggcaacaaat
tcaacggtaactttgagccggcggtgaagaaaatgctcagccacttatttcactgtatgg
gccacatgtatctgaaacattgggacgtgctcggcgcactgcaacttcgcccccaatgtg
caattgtgtttgcgcatattgcagagttgggaaggacattcagcctgctcgatgccaaag
atcaagagcaagttgacgaatgtgtgacggaggtgcgcccaatcctgcccgtgctatcac
aaacgttatctctggacgatccggaccatccacacgacggtgatcgttcaagccgggttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCACAACGTTCTCGGACTTTTCGA 376 223 296 Antisense
GGAACGTTATCAGAGGTGTGCACCC 559 529 340 Antisense
TGCCCTCACATGAGCTTTCCGGGCA 334 585 373 Antisense
GACGAACGTGGCAAGCGGCAGGTGT 185 379 418 Antisense
AATGCTCAGCCACTTATTTCACTGT 103 167 567 Antisense
TGAAACATTGGGACGTGCTCGGCGC 273 573 608 Antisense
TGGGAAGGACATTCAGCCTGCTCGA 1 555 683 Antisense
CGAATGTGTGACGGAGGTGCGCCCA 587 253 732 Antisense
CTGCCCGTGCTATCACAAACGTTAT 543 233 760 Antisense
AACGTTATCTCTGGACGATCCGGAC 186 143 777 Antisense
GACGGTGATCGTTCAAGCCGGGTTC 51 375 811 Antisense
Sequence Source Affymetrix Proprietary Database