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[179995_at]

Description W03A3.3 /REP_DB=WormBase Gene ID /WP=CE07565 /TR=Q23134 /GB=AAB93324.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 5.4
(-3)
A 		6.6
(-2.5)
A 		6.5
(-2.6)
A 		21.2
(3)
A 		16
B 7.5
(-0.4)
A 		14.1
(3)
A 		2.5
(-3)
A 		6.1
(-1.1)
A 		12
C 27
(-1.4)
A 		7.1
(-2.8)
A 		3.8
(-3)
A 		90.5
(3)
A 		87
avr 13.3
(-1.5) 		9.3
(-2.1) 		4.3
(-3) 		39.3
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 22.7
(1.8)
A 		6.3
(-2.1)
A 		21.5
(1.5)
A 		2.3
(-3)
A 		4.9
(-2.4)
A 		27.8
(3)
A 		26
B 6
(-2.7)
A 		12.8
(-0.1)
A 		12.8
(-0.1)
A 		5.3
(-3)
A 		21
(3)
A 		12.9
(-0.1)
A 		16
C 3.8
(-2.7)
A 		25.1
(3)
A 		4.4
(-2.5)
A 		6
(-2.1)
A 		2.5
(-3)
A 		15.3
(0.4)
A 		23
avr 10.8
(-0.3) 		14.7
(1.3) 		12.9
(0.5) 		4.5
(-3) 		9.5
(-0.9) 		18.7
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2
(-0.9)
A 		1.4
(-3)
A 		1.7
(-1.9)
A 		3.1
(3)
A 		2
B 2.4
(0.7)
A 		3.5
(3)
A 		0.6
(-3)
A 		1.3
(-1.6)
A 		3
C 8.9
(0.3)
A 		2
(-2.7)
A 		1.3
(-3)
A 		15.3
(3)
A 		14
avr 4.4
(0.6) 		2.3
(-1.8) 		1.2
(-3) 		6.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 4.2
(0.5)
A 		2.3
(-1.4)
A 		4.7
(1)
A 		0.6
(-3)
A 		1.5
(-2.1)
A 		6.8
(3)
A 		6
B 2.1
(-2.4)
A 		4.2
(-0.6)
A 		3.1
(-1.6)
A 		1.4
(-3)
A 		8.5
(3)
A 		4.8
(-0.1)
A 		7
C 1.4
(-2.5)
A 		7.7
(3)
A 		1.1
(-2.7)
A 		1.2
(-2.7)
A 		0.8
(-3)
A 		5.1
(0.7)
A 		7
avr 2.6
(-1) 		4.7
(1.8) 		3
(-0.5) 		1.1
(-3) 		3.6
(0.3) 		5.6
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179995_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6365
Sequence Type Exemplar sequence
Representative Public ID W03A3.3 NCBI
Target Description W03A3.3 /REP_DB=WormBase Gene ID /WP=CE07565 /TR=Q23134 /GB=AAB93324.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065851(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065851 NCBI Caenorhabditis elegans W03A3.3 (W03A3.3) mRNA, complete cds. 11/11 None
W03A3.3 ENSEMBL cdna:known chromosome:CEL140:III:5801116:5802407:-1 gene:W03A3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015240 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5801114-5802406(-) 100.0 100.0
Public Domain and Genome References
Ensembl W03A3.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498252 W03A3.3 [Caenorhabditis elegans] 0.0
blast CAE64396 Hypothetical protein CBG09086 [Caenorhabditis briggsae] 1.0E-165
blast T34471 hypothetical protein W03A3.3 - Caenorhabditis elegans 1.0E-142
blast NP_498252 W03A3.3 [Caenorhabditis elegans] 1.0E-142
blast CAE64396 Hypothetical protein CBG09086 [Caenorhabditis briggsae] 1.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 1.3E-12
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 2.3E-17
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 2.2E-7
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 2.3E-17
Sequence
Target Sequence 
>C. ELEGANS:179995_AT
agatttcgaccaattgttctacaaaatcatattgtaattggttcggagttgaggaaatct
ggagataacaaagttctaagagaattctctgaagatccattaatattgcttaccgaagag
agttttcgccgcaattctcagactttggtaatgatttcttcgaaacttgatgccgagaag
actgctttgaatattgcgtcgagattccatgagatcaataaaaccgacagctcattgttg
gaaatattaaaagaacgagccaatggactattatttataaagcatggattggaacggaat
ggttgcaaggatcggaatgttatgtcaacacttgcatggggagtagcatatcatcatgct
ggattgacgatggaggaaagagaatgcattgaactaggatttcgggagaaaaatattgtt
attcttgtggctacaagtactttggcttcaggcgtaaatctccctgcggaacgagtactc
atcaaggctcagccacgtggcccatcggctctcacttctctaaattaccgtcagatggtg
ggaagagcgggaagaacaggacatgctacacgaggtacgtcttcttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATTTCGACCAATTGTTCTACAAA 523 65 205 Antisense
TCGCCGCAATTCTCAGACTTTGGTA 457 599 330 Antisense
ATATTGCGTCGAGATTCCATGAGAT 460 17 395 Antisense
AAAACCGACAGCTCATTGTTGGAAA 386 129 424 Antisense
GTGGCTACAAGTACTTTGGCTTCAG 662 491 631 Antisense
TTTGGCTTCAGGCGTAAATCTCCCT 651 665 645 Antisense
AAATCTCCCTGCGGAACGAGTACTC 145 119 660 Antisense
CGAGTACTCATCAAGGCTCAGCCAC 2 249 676 Antisense
TCGGCTCTCACTTCTCTAAATTACC 568 605 709 Antisense
GGAAGAACAGGACATGCTACACGAG 539 531 754 Antisense
GCTACACGAGGTACGTCTTCTTTTC 212 303 769 Antisense
Sequence Source Affymetrix Proprietary Database