[Home] | [Total List]

[179993_at]

Description F35C11.6 /REP_DB=WormBase Gene ID /WP=CE02212 /TR=Q20020 /GB=CAA90243.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 94      6grp_total > 67      4grp_total > 03      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 932
1 2 3 4 range
A 414.1
(-2.3)
P 		314.9
(-3)
P 		324.6
(-2.9)
P 		1112.9
(3)
P 		798
B 445.1
(-2.1)
P 		300.5
(-3)
P 		358.2
(-2.6)
P 		1232.9
(3)
P 		932
C 425.8
(-2.2)
P 		333.4
(-2.8)
P 		304.2
(-3)
P 		1170.7
(3)
P 		867
avr 428.3
(-2.2) 		316.3
(-3) 		329
(-2.9) 		1172.2
(3) 		856

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 518
1 2 3 4 5 6 range
A 571.8
(-1.2)
P 		433.1
(-3)
P 		511.6
(-2)
P 		505.8
(-2.1)
P 		537.5
(-1.7)
P 		904.3
(3)
P 		471
B 500.3
(-2.6)
P 		476.7
(-3)
P 		481.2
(-2.9)
P 		515.3
(-2.4)
P 		503.3
(-2.6)
P 		871.2
(3)
P 		395
C 474.8
(-2.6)
P 		482.2
(-2.5)
P 		559.6
(-1.6)
P 		671.3
(-0.3)
P 		438.5
(-3)
P 		951.4
(3)
P 		513
avr 515.6
(-2.3) 		464
(-3) 		517.5
(-2.3) 		564.1
(-1.7) 		493.1
(-2.6) 		909
(3) 		445
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 150.8
(2.2)
P 		68.4
(-3)
P 		84.8
(-2)
P 		162.9
(3)
P 		95
B 141.9
(-0.8)
P 		74.2
(-3)
P 		83
(-2.7)
P 		262.7
(3)
P 		189
C 140.9
(-0.3)
P 		95.8
(-3)
P 		106
(-2.4)
P 		197.4
(3)
P 		102
avr 144.5
(0) 		79.5
(-3) 		91.3
(-2.4) 		207.7
(3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 105.4
(-3)
P 		154
(-0.5)
P 		111.4
(-2.7)
P 		128.3
(-1.8)
P 		162.2
(-0)
P 		220.2
(3)
P 		115
B 174.1
(-1.3)
P 		158.7
(-1.8)
P 		116.8
(-3)
P 		136.5
(-2.4)
P 		204.5
(-0.5)
P 		324.9
(3)
P 		208
C 176
(-1.7)
P 		147.1
(-2.6)
P 		142.4
(-2.8)
P 		135
(-3)
P 		141.9
(-2.8)
P 		318.5
(3)
P 		184
avr 151.8
(-2) 		153.3
(-1.9) 		123.5
(-3) 		133.3
(-2.6) 		169.5
(-1.3) 		287.9
(3) 		164
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179993_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3559
Sequence Type Exemplar sequence
Representative Public ID F35C11.6 NCBI
Target Description F35C11.6 /REP_DB=WormBase Gene ID /WP=CE02212 /TR=Q20020 /GB=CAA90243.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063339(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063339 NCBI Caenorhabditis elegans F35C11.6 (F35C11.6) mRNA, complete cds. 11/11 None
SNAP00000018026 ENSEMBL cdna:SNAP chromosome:CEL140:II:8258143:8259053:-1 11/11 None
GENEFINDER00000018031 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8258143:8259059:-1 11/11 None
F35C11.6 ENSEMBL cdna:known chromosome:CEL140:II:8258143:8259053:-1 gene:F35C11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8258139-8259050(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35C11.6
Entrez Gene 185273 Entrez gene
SwissProt Q20020 EMBL-EBI
WormBase CE02212 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90243 Hypothetical protein F35C11.6 [Caenorhabditis elegans] ref|NP_495740.1| F35C11.6 [Caenorhabditis elegans] 2.0E-94
blast CAE57671 Hypothetical protein CBG00664 [Caenorhabditis briggsae] 6.0E-66
Sequence
Target Sequence 
>C. ELEGANS:179993_AT
agtggtgctgaatcttctgttgaattctatgctgctgcaaggcagagtagtttatacgaa
ccaaggaagaagagcagccaatcgagaacttacacccctgaaggacgcgttcttgtgaat
ggagctccgttgtcaccaacactcgatccccaagatctttggaagaatatgataatcaag
acagctgctcaaaaaatgatacgtgagaactgtgagaaaaaggaaacaggaccaatggca
acgattagaagattgtccgagaagttaaaattgaagaaatcaaaatcatcagctgcaatg
atgaatttggatttggatcttgatcagaagattccagaagtttctgaaatagaatcaagt
tcaactaccgccgttccacaatcaccacaacaatttgtaacaaacataagaattgaagaa
gcgaatccagtattttttgttcaacaatcagaatcactcgaccgtccacatatgttattt
gaagagacaagtgtcctcgcgcgtctgctcgaggaatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGGTGCTGAATCTTCTGTTGAAT 347 59 31 Antisense
GTTGAATTCTATGCTGCTGCAAGGC 187 439 49 Antisense
GAAGAGCAGCCAATCGAGAACTTAC 388 339 99 Antisense
CCCCTGAAGGACGCGTTCTTGTGAA 415 255 125 Antisense
GTGAATGGAGCTCCGTTGTCACCAA 510 481 145 Antisense
CAACACTCGATCCCCAAGATCTTTG 280 189 167 Antisense
AGAATCAAGTTCAACTACCGCCGTT 682 71 381 Antisense
AACAATCAGAATCACTCGACCGTCC 490 133 473 Antisense
ACTCGACCGTCCACATATGTTATTT 630 99 486 Antisense
TGAAGAGACAAGTGTCCTCGCGCGT 365 575 510 Antisense
CCTCGCGCGTCTGCTCGAGGAATCT 321 265 525 Antisense
Sequence Source Affymetrix Proprietary Database