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[179992_at]

Description ZK1086.3 /REP_DB=WormBase Gene ID /WP=CE06682 /TR=Q23394 /GB=CAA94222.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 7.8
(-2.5)
A 		9
(-2.1)
A 		6.6
(-3)
A 		21.9
(3)
A 		15
B 3.1
(-3)
A 		10.6
(3)
A 		9.5
(2.1)
A 		5.9
(-0.8)
A 		8
C 4
(-3)
A 		66.7
(3)
A 		23.1
(-1.2)
A 		8.7
(-2.6)
A 		63
avr 5
(-3) 		28.8
(3) 		13.1
(-1) 		12.2
(-1.2) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 14.7
(-0.3)
A 		28.9
(3)
A 		9.8
(-1.5)
A 		5.2
(-2.5)
A 		6.7
(-2.2)
A 		3.2
(-3)
A 		26
B 4.7
(0.4)
A 		3
(-1.4)
A 		4.6
(0.3)
A 		6.8
(2.7)
A 		7.1
(3)
A 		1.5
(-3)
A 		6
C 5.8
(-2.8)
A 		22
(0.4)
A 		16.3
(-0.7)
A 		34.8
(3)
A 		4.9
(-3)
A 		5.5
(-2.9)
A 		30
avr 8.4
(-0.9) 		18
(3) 		10.2
(-0.2) 		15.6
(2) 		6.2
(-1.8) 		3.4
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 2.8
(1.4)
A 		1.9
(-2.2)
A 		1.7
(-3)
A 		3.2
(3)
A 		2
B 1
(-3)
A 		2.6
(3)
A 		2.2
(1.5)
A 		1.2
(-2.3)
A 		2
C 1.3
(-3)
A 		19.2
(3)
A 		8
(-0.8)
A 		1.5
(-2.9)
A 		18
avr 1.7
(-3) 		7.9
(3) 		4
(-0.8) 		2
(-2.7) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.7
(-1.8)
A 		10.3
(3)
A 		2.1
(-2.2)
A 		1.3
(-2.7)
A 		2
(-2.2)
A 		0.8
(-3)
A 		10
B 1.6
(-0.4)
A 		1
(-2)
A 		1.1
(-1.7)
A 		1.8
(0.1)
A 		2.9
(3)
A 		0.6
(-3)
A 		2
C 2.1
(-2.4)
A 		6.7
(2.7)
A 		4.2
(-0.1)
A 		7
(3)
A 		1.6
(-3)
A 		1.9
(-2.7)
A 		5
avr 2.1
(-1.8) 		6
(3) 		2.5
(-1.3) 		3.4
(-0.2) 		2.2
(-1.7) 		1.1
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179992_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17481
Sequence Type Exemplar sequence
Representative Public ID ZK1086.3 NCBI
Target Description ZK1086.3 /REP_DB=WormBase Gene ID /WP=CE06682 /TR=Q23394 /GB=CAA94222.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077901(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077901 NCBI Caenorhabditis elegans ZK1086.3 (ZK1086.3) mRNA, complete cds. 11/11 None
SNAP00000043452 ENSEMBL cdna:SNAP chromosome:CEL140:X:13790684:13792179:1 10/11 None
GENEFINDER00000043458 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13790684:13792179:1 10/11 None
ZK1086.3 ENSEMBL cdna:known chromosome:CEL140:X:13790684:13791868:1 gene:ZK1086.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13790683-13791868(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1086.3
Entrez Gene 191520 Entrez gene
SwissProt Q23394 EMBL-EBI
WormBase CE06682 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94222 Hypothetical protein ZK1086.3 [Caenorhabditis elegans] ref|NP_510302.1| ZK1086.3 [Caenorhabditis elegans] 1.0E-169
blast CAE69125 Hypothetical protein CBG15151 [Caenorhabditis briggsae] 1.0E-157
blast CAE69125 Hypothetical protein CBG15151 [Caenorhabditis briggsae] 1.0E-155
blast CAA94222 Hypothetical protein ZK1086.3 [Caenorhabditis elegans] ref|NP_510302.1| ZK1086.3 [Caenorhabditis elegans] 1.0E-149
blast CAA94222 Hypothetical protein ZK1086.3 [Caenorhabditis elegans] ref|NP_510302.1| ZK1086.3 [Caenorhabditis elegans] 1.0E-147
blast AAK73857 Hypothetical protein BE0003N10.3 [Caenorhabditis elegans] ref|NP_497325.1| BE0003N10.3 [Caenorhabditis elegans] 1.0E-137
blast AAK73857 Hypothetical protein BE0003N10.3 [Caenorhabditis elegans] ref|NP_497325.1| BE0003N10.3 [Caenorhabditis elegans] 1.0E-136
blast CAE69125 Hypothetical protein CBG15151 [Caenorhabditis briggsae] 3.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 6.2E-47
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 6.2E-47
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 3.5E-44
Sequence
Target Sequence 
>C. ELEGANS:179992_AT
aagttgaacaacccttggatccacgctacgaagagctaaataatcttccattgtgtggta
acctaggttccactgactgcattgcccctattgtagatctatggaaggatcatcccaagg
aaatgaatctcgaatgggtggctaaagctgcggtttgtgacaaacttccaatacttgaga
aattgaaagtggtaccatttaataattatcatgaaacaaaatgggcaattcttccaaaat
gtaaagaagagaacgtcttggtaactatgggaattggacatgacactaccgccgaagaac
gtttaaaccgaaccatttcaaatacaaagttctatggagcagacccaattattgagccaa
atcgtcagatgtactcagcatttggaaaatttttcccatttgcaattgggaaaaatcctg
gtttcacaagattcagagtgctcccaaatcagagtcagaaaactagaaaatatatttatc
aggatgtgacaacgattccattcctctactttttacacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTGAACAACCCTTGGATCCACG 102 155 266 Antisense
CCTTGGATCCACGCTACGAAGAGCT 486 269 278 Antisense
TAATCTTCCATTGTGTGGTAACCTA 63 635 306 Antisense
TAACCTAGGTTCCACTGACTGCATT 543 637 324 Antisense
ACTGCATTGCCCCTATTGTAGATCT 201 99 341 Antisense
GGTGGCTAAAGCTGCGGTTTGTGAC 162 497 402 Antisense
GGAGCAGACCCAATTATTGAGCCAA 498 519 601 Antisense
GCCAAATCGTCAGATGTACTCAGCA 557 277 621 Antisense
CAGAGTGCTCCCAAATCAGAGTCAG 88 207 699 Antisense
GGATGTGACAACGATTCCATTCCTC 392 513 747 Antisense
TCCATTCCTCTACTTTTTACACGAT 617 591 762 Antisense
Sequence Source Affymetrix Proprietary Database