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[179990_at]

Description C06G3.8 /REP_DB=WormBase Gene ID /WP=CE07984 /TR=Q17749 /GB=AAB03138.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 34      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 132.7
(-3)
A 		351.8
(3)
A 		189.8
(-1.4)
A 		255.2
(0.4)
A 		219
B 155.1
(-3)
A 		266.4
(3)
A 		240.2
(1.6)
A 		247.3
(2)
A 		111
C 149.6
(-3)
A 		258
(1.9)
A 		241.8
(1.1)
A 		283.2
(3)
A 		134
avr 145.8
(-3) 		292.1
(3) 		223.9
(0.2) 		261.9
(1.8) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 316
1 2 3 4 5 6 range
A 183.7
(-3)
A 		248.8
(-1)
M 		274.6
(-0.2)
M 		239.2
(-1.3)
P 		219
(-1.9)
A 		376.4
(3)
P 		193
B 120.3
(-3)
A 		215.5
(-1)
A 		308
(1)
A 		208.6
(-1.1)
P 		239.1
(-0.4)
P 		399
(3)
P 		279
C 186.9
(-3)
M 		205.8
(-2.5)
A 		271
(-1)
A 		222.1
(-2.2)
A 		292.6
(-0.5)
P 		436.3
(3)
P 		249
avr 163.6
(-3) 		223.4
(-1.5) 		284.5
(0) 		223.3
(-1.5) 		250.2
(-0.8) 		403.9
(3) 		240
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 48.3
(-1.3)
A 		76.4
(3)
A 		49.6
(-1.1)
A 		37.4
(-3)
A 		39
B 49.5
(-3)
A 		65.8
(3)
A 		55.7
(-0.7)
A 		52.7
(-1.8)
A 		16
C 49.5
(-2.7)
A 		74.2
(1.3)
A 		84.3
(3)
A 		47.8
(-3)
A 		37
avr 49.1
(-2.3) 		72.1
(3) 		63.2
(1) 		46
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 33.9
(-3)
A 		88.5
(2.7)
M 		59.8
(-0.3)
M 		60.7
(-0.2)
P 		66.1
(0.3)
A 		91.6
(3)
P 		58
B 41.9
(-3)
A 		71.7
(-1.3)
A 		74.8
(-1.2)
A 		55.2
(-2.3)
P 		97.2
(0.1)
P 		148.8
(3)
P 		107
C 69.3
(-1.5)
M 		62.8
(-1.9)
A 		69
(-1.6)
A 		44.7
(-3)
A 		94.7
(-0)
P 		146
(3)
P 		101
avr 48.4
(-3) 		74.3
(-1.1) 		67.9
(-1.5) 		53.5
(-2.6) 		86
(-0.2) 		128.8
(3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179990_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9524
Sequence Type Exemplar sequence
Representative Public ID C06G3.8 NCBI
Target Description C06G3.8 /REP_DB=WormBase Gene ID /WP=CE07984 /TR=Q17749 /GB=AAB03138.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068688(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068688 NCBI Caenorhabditis elegans C06G3.8 (C06G3.8) mRNA, complete cds. 11/11 None
SNAP00000008739 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7031630:7032543:-1 11/11 None
GENEFINDER00000008747 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7031630:7032543:-1 11/11 None
C06G3.8 ENSEMBL cdna:known chromosome:CEL140:IV:7031554:7032543:-1 gene:C06G3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7031635-7032549(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06G3.8
Entrez Gene 177470 Entrez gene
WormBase CE07984 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB03138 Hypothetical protein C06G3.8 [Caenorhabditis elegans] ref|NP_501089.1| C06G3.8 [Caenorhabditis elegans] 7.0E-74
blast CAE57453 Hypothetical protein CBG00417 [Caenorhabditis briggsae] 3.0E-55
blast CAE62762 Hypothetical protein CBG06928 [Caenorhabditis briggsae] 5.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR004365 EMBL-EBI OB-fold nucleic acid binding domain 6.7E-7
Sequence
Target Sequence 
>C. ELEGANS:179990_AT
tctccaccaattgcagccaaacatgaattcgttttcggttactgtaattgttctagatcc
agggattcatcgcagaacacagacgggaacaattatttcaatgaaagtggctgacgcatc
gggatctatcaatgcatcaataatgaatcctgaattcaatgaaactttcaagccgggaga
cattttgaagttccgtggagcatatacatcaatttatcagggaggcttgactctttccgt
tggaaaatctggagaatgcaagaaggtcggtgaatttatgatggtattctccgaaacacc
agatatcagtatgatgcctctgccagctggagttatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCACCAATTGCAGCCAAACATG 75 609 30 Antisense
ACATGAATTCGTTTTCGGTTACTGT 608 99 50 Antisense
GGTTACTGTAATTGTTCTAGATCCA 66 507 66 Antisense
GATCCAGGGATTCATCGCAGAACAC 265 415 85 Antisense
AAGTGGCTGACGCATCGGGATCTAT 205 159 134 Antisense
GAAACTTTCAAGCCGGGAGACATTT 305 357 190 Antisense
AAGTTCCGTGGAGCATATACATCAA 202 155 217 Antisense
ATCAGGGAGGCTTGACTCTTTCCGT 611 29 245 Antisense
ATGATGGTATTCTCCGAAACACCAG 273 43 307 Antisense
ATATCAGTATGATGCCTCTGCCAGC 57 21 332 Antisense
ATGCCTCTGCCAGCTGGAGTTATGG 85 41 343 Antisense
Sequence Source Affymetrix Proprietary Database