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[179989_at]

Description F36G9.14 /REP_DB=WormBase Gene ID /WP=CE15991 /TR=O45480 /GB=CAB04341.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 23      6grp_total > 12      4grp_total > 47      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 124.9
(3)
P 		74.2
(-3)
A 		90.1
(-1.1)
A 		96
(-0.4)
P 		51
B 108.4
(3)
P 		77.4
(-0.3)
A 		84.8
(0.5)
A 		51.8
(-3)
A 		57
C 131.6
(3)
P 		61.1
(-3)
A 		64.8
(-2.7)
P 		94.8
(-0.1)
A 		71
avr 121.6
(3) 		70.9
(-3) 		79.9
(-1.9) 		80.9
(-1.8) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 75.6
(0.8)
P 		113.2
(3)
P 		87.3
(1.5)
P 		105.9
(2.6)
P 		69.3
(0.4)
A 		10.8
(-3)
A 		102
B 132.7
(3)
P 		87.5
(-1.1)
P 		72.4
(-2.5)
P 		82.9
(-1.5)
M 		68.3
(-2.8)
P 		66.5
(-3)
P 		66
C 85.9
(-1.4)
P 		142.9
(3)
P 		86.7
(-1.4)
M 		98.9
(-0.4)
P 		77
(-2.1)
P 		66
(-3)
P 		77
avr 98.1
(1.5) 		114.5
(3) 		82.1
(0.1) 		95.9
(1.3) 		71.5
(-0.9) 		47.8
(-3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 45.5
(3)
P 		16.1
(-2.6)
A 		23.5
(-1.2)
A 		14.1
(-3)
P 		31
B 34.6
(3)
P 		19.1
(-0.9)
A 		19.7
(-0.8)
A 		11
(-3)
A 		24
C 43.5
(3)
P 		17.6
(-2.7)
A 		22.6
(-1.6)
P 		16
(-3)
A 		28
avr 41.2
(3) 		17.6
(-2.1) 		21.9
(-1.2) 		13.7
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 13.9
(-1.2)
P 		40.3
(3)
P 		19
(-0.4)
P 		26.9
(0.9)
P 		20.9
(-0.1)
A 		2.6
(-3)
A 		38
B 46.2
(3)
P 		29.1
(-0.6)
P 		17.6
(-3)
P 		22
(-2.1)
M 		27.7
(-0.9)
P 		24.8
(-1.5)
P 		29
C 31.8
(0)
P 		43.6
(3)
P 		22.1
(-2.4)
M 		19.9
(-3)
P 		24.9
(-1.7)
P 		22.1
(-2.4)
P 		24
avr 30.6
(1) 		37.7
(3) 		19.6
(-2.1) 		22.9
(-1.2) 		24.5
(-0.7) 		16.5
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179989_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14672
Sequence Type Exemplar sequence
Representative Public ID F36G9.14 NCBI
Target Description F36G9.14 /REP_DB=WormBase Gene ID /WP=CE15991 /TR=O45480 /GB=CAB04341.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074607(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074607 NCBI Caenorhabditis elegans F36G9.14 (F36G9.14) mRNA, complete cds. 11/11 None
GENEFINDER00000043432 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15984286:15985374:-1 11/11 None
F36G9.14 ENSEMBL cdna:known chromosome:CEL140:V:15984286:15985374:-1 gene:F36G9.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15984285-15985374(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36G9.14
Entrez Gene 185377 Entrez gene
SwissProt O45480 EMBL-EBI
WormBase CE15991 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04341 Hypothetical protein F36G9.14 [Caenorhabditis elegans] ref|NP_507008.1| F36G9.14 [Caenorhabditis elegans] 1.0E-175
blast CAB07208 Hypothetical protein F47H4.9 [Caenorhabditis elegans] ref|NP_507392.1| F47H4.9 [Caenorhabditis elegans] 1.0E-30
blast CAB07211 Hypothetical protein F47H4.4 [Caenorhabditis elegans] ref|NP_507388.1| F47H4.4 [Caenorhabditis elegans] 2.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.4E-39
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.9E-10
Sequence
Target Sequence 
>C. ELEGANS:179989_AT
aaccttcaagatttcaccataacgttttacgtcaatggggataattccaaaatacgagaa
acttatctgaaaattattcaaaaattttggagcaccttaatctgcataaaatcccagaga
tcactaattggaggcttcacgtttggagaactcgtgtacgttctgccaaaattcaaagct
caaaaactagaagatttgagactggatatgtgccaaaagattaatgacgaaaggtatata
aatgagctagttcaattggagcaatggaaacaagcaaaatcagtggaatttacaagaaat
tatttgctggaaataccgatcagaaatttgattcatttttctcgttgcgaacttacgttg
aaaaatattttgacaaaagaggatgttcttttaatcaaacaagctcttcacaacaatcct
gctaccattgaatccttatattttggaacacctatatcagatccaaccgaaaatttgaaa
atttttgagccacttcatgctggcggagagggctcaatcaattatgaaattggaggtttt
caattcgaaattcatttttactctgatttccttcatattaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCTTCAAGATTTCACCATAACGT 273 147 322 Antisense
AGCACCTTAATCTGCATAAAATCCC 261 77 412 Antisense
GAGATCACTAATTGGAGGCTTCACG 207 397 438 Antisense
GGAGGCTTCACGTTTGGAGAACTCG 615 511 451 Antisense
ACTCGTGTACGTTCTGCCAAAATTC 544 99 471 Antisense
GATTCATTTTTCTCGTTGCGAACTT 532 429 651 Antisense
AACAAGCTCTTCACAACAATCCTGC 337 135 719 Antisense
ATCCTGCTACCATTGAATCCTTATA 509 39 737 Antisense
GAACACCTATATCAGATCCAACCGA 687 343 767 Antisense
TTGAGCCACTTCATGCTGGCGGAGA 349 705 806 Antisense
TTTACTCTGATTTCCTTCATATTAA 398 673 878 Antisense
Sequence Source Affymetrix Proprietary Database