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[179988_s_at]

Description Y81G3A.1 /REP_DB=WormBase Gene ID /WP=CE23117 /TR=Q9XVY3 /GB=CAA22516.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 22      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 76.6
(3)
P 		31.9
(-0.7)
A 		4.6
(-3)
A 		73.5
(2.7)
A 		72
B 79.2
(3)
P 		50
(0.6)
A 		7.2
(-3)
A 		51.6
(0.7)
A 		72
C 66.1
(-0.2)
P 		33.1
(-3)
A 		40.3
(-2.4)
A 		103.4
(3)
P 		70
avr 74
(2.8) 		38.3
(-0.9) 		17.4
(-3) 		76.2
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 247
1 2 3 4 5 6 range
A 49.8
(-2)
A 		29
(-2.7)
A 		20.9
(-3)
A 		98.3
(-0.4)
P 		113.3
(0.1)
P 		200
(3)
P 		179
B 47.1
(-2.1)
A 		29.9
(-2.5)
A 		10.5
(-3)
A 		58.6
(-1.8)
A 		228.9
(2.3)
P 		257.4
(3)
P 		247
C 26.3
(-3)
A 		27.4
(-3)
A 		31
(-2.9)
A 		46.9
(-2.4)
A 		177.6
(1.2)
P 		244.3
(3)
P 		218
avr 41.1
(-2.4) 		28.8
(-2.8) 		20.8
(-3) 		67.9
(-1.7) 		173.3
(1.3) 		233.9
(3) 		213
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 27.9
(3)
P 		6.9
(-1.7)
A 		1.2
(-3)
A 		10.8
(-0.8)
A 		27
B 25.3
(3)
P 		12.4
(-0.3)
A 		1.7
(-3)
A 		11
(-0.6)
A 		24
C 21.9
(3)
P 		9.5
(-3)
A 		14.1
(-0.8)
A 		17.4
(0.8)
P 		12
avr 25
(3) 		9.6
(-1.8) 		5.7
(-3) 		13.1
(-0.7) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 9.2
(-2.4)
A 		10.3
(-2.2)
A 		4.5
(-3)
A 		24.9
(-0.2)
P 		34.2
(1)
P 		48.7
(3)
P 		44
B 16.4
(-2.1)
A 		10
(-2.5)
A 		2.6
(-3)
A 		15.5
(-2.2)
A 		93
(2.8)
P 		96
(3)
P 		93
C 9.7
(-2.9)
A 		8.4
(-3)
A 		7.9
(-3)
A 		9.4
(-2.9)
A 		57.5
(1)
P 		81.8
(3)
P 		74
avr 11.8
(-2.4) 		9.6
(-2.6) 		5
(-3) 		16.6
(-2) 		61.6
(1.8) 		75.5
(3) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179988_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3182
Sequence Type Exemplar sequence
Representative Public ID Y81G3A.1 NCBI
Target Description Y81G3A.1 /REP_DB=WormBase Gene ID /WP=CE23117 /TR=Q9XVY3 /GB=CAA22516.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064379(11), NM_064378(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064379 NCBI Caenorhabditis elegans Y81G3A.1 (Y81G3A.1) mRNA, complete cds. 11/11 None
NM_064378 NCBI Caenorhabditis elegans F42G4.6 (F42G4.6) mRNA, complete cds. 11/11 None
SNAP00000006872 ENSEMBL cdna:SNAP chromosome:CEL140:II:13082400:13088456:-1 11/11 None
GENEFINDER00000006881 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13081691:13083572:-1 10/11 None
F42G4.6 ENSEMBL cdna:known chromosome:CEL140:II:13079312:13080592:1 gene:F42G4.6 11/11 None
Y81G3A.1 ENSEMBL cdna:known chromosome:CEL140:II:13082400:13083572:-1 gene:Y81G3A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006870 6/11 Cross Hyb Matching Probes None
GENEFINDER00000006877 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13079308-13080564(+) 100.0 100.0
chrII:13082396-13083569(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl F42G4.6
Y81G3A.1
Entrez Gene 174952 Entrez gene
190747 Entrez gene
SwissProt Q9XTC9 EMBL-EBI
Q9XVY3 EMBL-EBI
WormBase CE20776 Wormbase
CE23117 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03098 Hypothetical protein F42G4.6 [Caenorhabditis elegans] emb|CAA22519.1| Hypothetical protein F42G4.6 [Caenorhabditis elegans] ref|NP_496779.1| F42G4.6 [Caenorhabditis elegans] 1.0E-139
blast CAA85459 Hypothetical protein F44F4.10 [Caenorhabditis elegans] ref|NP_496350.1| F44F4.10 [Caenorhabditis elegans] 1.0E-115
blast CAA22516 Hypothetical protein Y81G3A.1 [Caenorhabditis elegans] ref|NP_496780.1| Y81G3A.1 [Caenorhabditis elegans] 1.0E-114
blast CAA22516 Hypothetical protein Y81G3A.1 [Caenorhabditis elegans] ref|NP_496780.1| Y81G3A.1 [Caenorhabditis elegans] 1.0E-104
blast CAA22516 Hypothetical protein Y81G3A.1 [Caenorhabditis elegans] ref|NP_496780.1| Y81G3A.1 [Caenorhabditis elegans] 1.0E-101
blast CAB03098 Hypothetical protein F42G4.6 [Caenorhabditis elegans] emb|CAA22519.1| Hypothetical protein F42G4.6 [Caenorhabditis elegans] ref|NP_496779.1| F42G4.6 [Caenorhabditis elegans] 3.0E-92
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000006872 1 61-83
GENEFINDER00000006881 2 226-248,255-277
Sequence
Target Sequence 
>C. ELEGANS:179988_S_AT
aaagccagatggtcggagctccaacggcaaaaaaccagtggacaacgagtacgtgaatct
tcctgtattgagcgaagagcaaaaactggctgataagcttgcggccaagctgagaaagtt
ggaggtgaaggagccgaagagcaagaaaagaggaagtaaggagcgaaagaagaagaagtc
ggagcccgtagagagcacatatgagagcttggccactattgaaggatccacgaactactc
tggtccagttaccactgaatctttggagagcaatgtgaaattccaccatgcttcccagac
ggcctacatcggtgtgtacagctctgcggacgctgaagctcaagtcaagaatcgtggaga
gtttgcgctgtaccacctattcgaggtgggaaacggcattgaccatctcacggcgactct
tccattcggtggattgtggatacccaatcgttcgcaaacactactcgctcaatcaactcg
ttcaatactacaaatcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCCAGATGGTCGGAGCTCCAAC 617 123 207 Antisense
GGAGCTCCAACGGCAAAAAACCAGT 298 519 221 Antisense
AAACCAGTGGACAACGAGTACGTGA 528 125 238 Antisense
GTACGTGAATCTTCCTGTATTGAGC 74 459 255 Antisense
CTGGCTGATAAGCTTGCGGCCAAGC 294 241 292 Antisense
AGTCGGAGCCCGTAGAGAGCACATA 261 61 383 Antisense
GAACTACTCTGGTCCAGTTACCACT 83 351 438 Antisense
GAATCGTGGAGAGTTTGCGCTGTAC 527 329 555 Antisense
TGCGCTGTACCACCTATTCGAGGTG 528 581 570 Antisense
TGGGAAACGGCATTGACCATCTCAC 675 553 593 Antisense
CAACTCGTTCAATACTACAAATCGT 85 189 680 Antisense
Sequence Source Affymetrix Proprietary Database