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[179986_at]

Description ZK856.12 /REP_DB=WormBase Gene ID /WP=CE06669 /TR=Q23647 /GB=CAA94860.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 69.5
(-2.6)
P 		86.7
(-1.6)
A 		61.9
(-3)
A 		167.8
(3)
P 		106
B 78.7
(-1.6)
P 		56.7
(-3)
A 		141.2
(2.6)
A 		148
(3)
P 		91
C 67.7
(-3)
P 		131.5
(0.1)
A 		160.6
(1.5)
A 		192.6
(3)
P 		125
avr 72
(-3) 		91.6
(-1.8) 		121.2
(0) 		169.5
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 510
1 2 3 4 5 6 range
A 42.5
(-3)
A 		95.9
(-2.4)
A 		126
(-2)
A 		102.2
(-2.3)
P 		326.7
(0.4)
P 		543.8
(3)
P 		501
B 98.8
(-3)
A 		98.5
(-3)
A 		148.7
(-1.5)
A 		177.1
(-0.7)
P 		301.1
(3)
P 		241.1
(1.2)
P 		203
C 45.6
(-2.7)
A 		34
(-3)
A 		182.4
(1.1)
P 		237.6
(2.6)
P 		250.9
(3)
P 		247.9
(2.9)
P 		217
avr 62.3
(-3) 		76.1
(-2.7) 		152.4
(-1.1) 		172.3
(-0.7) 		292.9
(1.9) 		344.3
(3) 		282
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 25.3
(3)
P 		18.8
(-1.3)
A 		16.2
(-3)
A 		24.6
(2.5)
P 		9
B 25.1
(0.6)
P 		14
(-3)
A 		32.7
(3)
A 		31.5
(2.6)
P 		19
C 22.4
(-3)
P 		37.8
(-0.3)
A 		56
(3)
A 		32.5
(-1.2)
P 		34
avr 24.3
(-2.6) 		23.5
(-3) 		35
(3) 		29.5
(0.1) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 7.8
(-3)
A 		34.1
(-1.7)
A 		27.4
(-2.1)
A 		25.9
(-2.1)
P 		98.6
(1.4)
P 		132.4
(3)
P 		125
B 34.4
(-2.9)
A 		32.8
(-3)
A 		36.1
(-2.8)
A 		46.9
(-2.1)
P 		122.3
(3)
P 		89.9
(0.8)
P 		90
C 16.9
(-2.5)
A 		10.4
(-3)
A 		46.4
(-0)
P 		47.8
(0.1)
P 		81.2
(2.9)
P 		83
(3)
P 		73
avr 19.7
(-3) 		25.8
(-2.6) 		36.6
(-1.8) 		40.2
(-1.5) 		100.7
(2.9) 		101.8
(3) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179986_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12057
Sequence Type Exemplar sequence
Representative Public ID ZK856.12 NCBI
Target Description ZK856.12 /REP_DB=WormBase Gene ID /WP=CE06669 /TR=Q23647 /GB=CAA94860.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073227(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073227 NCBI Caenorhabditis elegans ZK856.12 (ZK856.12) mRNA, complete cds. 11/11 None
SNAP00000036958 ENSEMBL cdna:SNAP chromosome:CEL140:V:10215529:10218576:1 11/11 None
GENEFINDER00000036966 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10215529:10218576:1 11/11 None
ZK856.12 ENSEMBL cdna:known chromosome:CEL140:V:10215529:10218803:1 gene:ZK856.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10215528-10217752(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK856.12
Entrez Gene 179421 Entrez gene
SwissProt Q23647 EMBL-EBI
WormBase CE06669 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94860 Hypothetical protein ZK856.12 [Caenorhabditis elegans] ref|NP_505628.1| ZK856.12 [Caenorhabditis elegans] 0.0
blast AAB52439 Hypothetical protein C06A5.6 [Caenorhabditis elegans] ref|NP_491730.1| C06A5.6 [Caenorhabditis elegans] 1.0E-109
blast AAB52439 Hypothetical protein C06A5.6 [Caenorhabditis elegans] ref|NP_491730.1| C06A5.6 [Caenorhabditis elegans] 3.0E-90
blast CAE60328 Hypothetical protein CBG03920 [Caenorhabditis briggsae] 5.0E-39
Sequence
Target Sequence 
>C. ELEGANS:179986_AT
tcctgcatcaattattcgagcgccatcaaggctagctggctcactaaacaaagtctcaat
tgagcgtccaaatacgccattgccaacatcttccaaaaattctgaacacaacatgtcgga
aataagcacatatgaagcgtcttctatttcaagtcatcaccttgttccacaatcaccatc
cgttccaaaaacgaattatactgttccagtcgtgcagagaccattgactgctccagagaa
attcagagatccgtttggaggacccggctctagcgatatcctgaatacgaagatgctttg
ttcagaaaaaaacatcgttccctcaaataaatttggtcgccagatttcgccaggcaaaga
tgacaaaaatgagaattatcaatatagcagaatggaaacaaagccccaaacattgttcgc
tccagtccttgatgaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTGCATCAATTATTCGAGCGCCA 572 593 1368 Antisense
GAGCGCCATCAAGGCTAGCTGGCTC 168 387 1385 Antisense
CAAATACGCCATTGCCAACATCTTC 625 193 1436 Antisense
GAAGCGTCTTCTATTTCAAGTCATC 510 343 1501 Antisense
CAAGTCATCACCTTGTTCCACAATC 212 185 1517 Antisense
ACTGTTCCAGTCGTGCAGAGACCAT 694 97 1567 Antisense
AGAGATCCGTTTGGAGGACCCGGCT 617 67 1612 Antisense
CCGGCTCTAGCGATATCCTGAATAC 516 265 1631 Antisense
GTCGCCAGATTTCGCCAGGCAAAGA 524 475 1703 Antisense
ACAAAGCCCCAAACATTGTTCGCTC 496 111 1765 Antisense
TGTTCGCTCCAGTCCTTGATGAAAA 179 563 1781 Antisense
Sequence Source Affymetrix Proprietary Database