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[179985_at]

Description M01G12.6 /REP_DB=WormBase Gene ID /WP=CE18070 /TR=O62312 /GB=CAB04615.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 22.7
(-0.9)
A 		57.5
(3)
A 		3.8
(-3)
A 		40.7
(1.1)
A 		54
B 26.4
(1.4)
A 		35.2
(3)
A 		32.1
(2.4)
A 		2.3
(-3)
A 		33
C 20.9
(-1.8)
A 		29.7
(2.7)
A 		18.5
(-3)
A 		30.2
(3)
A 		12
avr 23.3
(-1.6) 		40.8
(3) 		18.1
(-3) 		24.4
(-1.3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 37.6
(1.1)
A 		15.6
(-1.5)
A 		28.4
(0)
A 		3.1
(-3)
A 		53.4
(3)
A 		8
(-2.4)
A 		50
B 2.3
(-3)
A 		32.8
(0.7)
A 		5.3
(-2.6)
A 		51.8
(3)
A 		28.8
(0.2)
A 		1.9
(-3)
A 		50
C 23.1
(-1.1)
A 		34
(2.3)
P 		36.4
(3)
A 		29
(0.7)
A 		16.8
(-3)
A 		17.3
(-2.8)
A 		20
avr 21
(-0) 		27.5
(1.6) 		23.4
(0.6) 		28
(1.7) 		33
(3) 		9.1
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 8.3
(0.8)
A 		12.5
(3)
A 		1
(-3)
A 		6
(-0.4)
A 		12
B 8.4
(2.8)
A 		8.7
(3)
A 		7.4
(2)
A 		0.5
(-3)
A 		8
C 6.9
(0.2)
A 		8.5
(3)
A 		6.4
(-0.7)
A 		5.1
(-3)
A 		3
avr 7.9
(1) 		9.9
(3) 		4.9
(-2) 		3.9
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 6.9
(-0.6)
A 		5.5
(-1.2)
A 		6.2
(-0.9)
A 		0.8
(-3)
A 		16.1
(3)
A 		1.9
(-2.6)
A 		15
B 0.8
(-3)
A 		10.9
(1.7)
A 		1.3
(-2.7)
A 		13.7
(3)
A 		11.7
(2.1)
A 		0.7
(-3)
A 		13
C 8.5
(0.7)
A 		10.4
(3)
P 		9.3
(1.7)
A 		5.8
(-2.5)
A 		5.4
(-3)
A 		5.8
(-2.5)
A 		5
avr 5.4
(-1.1) 		8.9
(1.4) 		5.6
(-1) 		6.8
(-0.1) 		11.1
(3) 		2.8
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179985_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.660
Sequence Type Exemplar sequence
Representative Public ID M01G12.6 NCBI
Target Description M01G12.6 /REP_DB=WormBase Gene ID /WP=CE18070 /TR=O62312 /GB=CAB04615.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060661(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060661 NCBI Caenorhabditis elegans M01G12.6 (M01G12.6) mRNA, complete cds. 11/11 A 
SNAP00000024225 ENSEMBL cdna:SNAP chromosome:CEL140:I:12126119:12128697:-1 11/11 None
M01G12.6 ENSEMBL cdna:known chromosome:CEL140:I:12126119:12129455:-1 gene:M01G12.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000024237 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12126049-12129386(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01G12.6
Entrez Gene 187383 Entrez gene
SwissProt O62312 EMBL-EBI
WormBase CE18070 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04615 Hypothetical protein M01G12.6 [Caenorhabditis elegans] ref|NP_493062.1| M01G12.6 [Caenorhabditis elegans] 0.0
blast CAB04615 Hypothetical protein M01G12.6 [Caenorhabditis elegans] ref|NP_493062.1| M01G12.6 [Caenorhabditis elegans] 1.0E-130
blast CAB04613 Hypothetical protein M01G12.4 [Caenorhabditis elegans] ref|NP_493064.1| Serpentine Receptor, class W family member (srw-111) [Caenorhabditis elegans] 2.0E-67
blast CAB04613 Hypothetical protein M01G12.4 [Caenorhabditis elegans] ref|NP_493064.1| Serpentine Receptor, class W family member (srw-111) [Caenorhabditis elegans] 8.0E-67
blast CAB03508 Hypothetical protein ZK1037.9 [Caenorhabditis elegans] ref|NP_506802.1| Serpentine Receptor, class W family member (srw-113) [Caenorhabditis elegans] 2.0E-26
blast CAB03508 Hypothetical protein ZK1037.9 [Caenorhabditis elegans] ref|NP_506802.1| Serpentine Receptor, class W family member (srw-113) [Caenorhabditis elegans] 7.0E-26
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493062.1 9 25-42,63-80,95-117,138-160,164-186,212-234,249-271,333-355,370-392
M01G12.6 9 25-42,63-80,95-117,138-160,164-186,212-234,249-271,333-355,370-392
SNAP00000024225 4 31-53,68-90,175-197,212-234
Sequence
Target Sequence 
>C. ELEGANS:179985_AT
tgaactgcttcgtatctattgccttctatggacttttccagctgctctcattcatcttgg
ctctaataacttatcatccaaatctggaaacatctcccctcaatttatatcgatcaatat
taaatctatactacatgccttttatatggacttgggctgtaacaatcagctactcaaatc
gtgttcagaagttattggaagagtataaaaacggtttggaaattatcatcccctgcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACTGCTTCGTATCTATTGCCTT 608 573 659 Antisense
CTATTGCCTTCTATGGACTTTTCCA 671 221 674 Antisense
TTCTATGGACTTTTCCAGCTGCTCT 293 691 682 Antisense
CTCTCATTCATCTTGGCTCTAATAA 659 229 703 Antisense
TAATAACTTATCATCCAAATCTGGA 131 635 722 Antisense
AACATCTCCCCTCAATTTATATCGA 538 125 747 Antisense
ACTACATGCCTTTTATATGGACTTG 574 101 788 Antisense
ATATGGACTTGGGCTGTAACAATCA 105 21 802 Antisense
GTAACAATCAGCTACTCAAATCGTG 554 461 817 Antisense
GCTACTCAAATCGTGTTCAGAAGTT 230 303 827 Antisense
GTTTGGAAATTATCATCCCCTGCCT 234 451 872 Antisense
Sequence Source Affymetrix Proprietary Database