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[179984_at]

Description K03A11.2 /REP_DB=WormBase Gene ID /WP=CE06072 /TR=Q21168 /GB=CAB00866.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 11      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 2.6
(-2.8)
A 		3.1
(-2.7)
A 		1.5
(-3)
A 		33.6
(3)
A 		32
B 5
(1.9)
A 		2
(-1.9)
A 		1.1
(-3)
A 		5.9
(3)
A 		5
C 1.4
(-2.6)
A 		8.2
(3)
A 		0.9
(-3)
A 		3.1
(-1.2)
A 		7
avr 3
(-2.2) 		4.4
(-1.5) 		1.2
(-3) 		14.2
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.5
(-2.4)
A 		1.1
(-3)
A 		5.4
(3)
A 		1.8
(-2)
A 		1.5
(-2.4)
A 		1.2
(-2.9)
A 		4
B 3
(1.7)
A 		2.9
(1.5)
A 		0.9
(-2.8)
A 		0.8
(-3)
A 		2
(-0.4)
A 		3.6
(3)
A 		3
C 1.5
(-2.2)
A 		2.5
(-1.1)
A 		1.6
(-2.1)
A 		6.5
(3)
A 		1.7
(-2)
A 		0.7
(-3)
A 		6
avr 2
(-1.6) 		2.2
(-0.7) 		2.6
(1.2) 		3
(3) 		1.7
(-3) 		1.8
(-2.5) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1
(-2.2)
A 		0.7
(-2.6)
A 		0.4
(-3)
A 		4.9
(3)
A 		5
B 1.6
(3)
A 		0.5
(-2.1)
A 		0.3
(-3)
A 		1.3
(1.6)
A 		1
C 0.5
(-2.4)
A 		2.4
(3)
A 		0.3
(-3)
A 		0.5
(-2.4)
A 		2
avr 1
(-0.8) 		1.2
(-0.2) 		0.3
(-3) 		2.2
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.4
(-2.3)
A 		1.2
(3)
A 		0.5
(-1.7)
A 		0.4
(-2.3)
A 		0.3
(-3)
A 		1
B 1
(1.4)
A 		1
(1.4)
A 		0.2
(-3)
A 		0.2
(-3)
A 		0.8
(0.3)
A 		1.3
(3)
A 		1
C 0.6
(-0.8)
A 		0.8
(0.3)
A 		0.4
(-1.9)
A 		1.3
(3)
A 		0.6
(-0.8)
A 		0.2
(-3)
A 		1
avr 0.6
(-3) 		0.7
(3) 		0.6
(-3) 		0.7
(3) 		0.6
(-3) 		0.6
(-3) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179984_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17666
Sequence Type Exemplar sequence
Representative Public ID K03A11.2 NCBI
Target Description K03A11.2 /REP_DB=WormBase Gene ID /WP=CE06072 /TR=Q21168 /GB=CAB00866.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077767(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077767 NCBI Caenorhabditis elegans K03A11.2 (K03A11.2) mRNA, complete cds. 11/11 None
SNAP00000007877 ENSEMBL cdna:SNAP chromosome:CEL140:X:13067415:13068296:-1 11/11 None
GENEFINDER00000007882 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13067415:13070883:-1 11/11 None
K03A11.2 ENSEMBL cdna:known chromosome:CEL140:X:13067415:13068103:-1 gene:K03A11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13067414-13068103(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cpx-2
Ensembl K03A11.2
Entrez Gene 186917 Entrez gene
SwissProt Q21168 EMBL-EBI
WormBase CE06072 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00866 Hypothetical protein K03A11.2 [Caenorhabditis elegans] ref|NP_510168.1| K03A11.2 [Caenorhabditis elegans] 2.0E-42
blast CAB00866 Hypothetical protein K03A11.2 [Caenorhabditis elegans] ref|NP_510168.1| K03A11.2 [Caenorhabditis elegans] 3.0E-42
blast CAE61377 Hypothetical protein CBG05222 [Caenorhabditis briggsae] 2.0E-38
blast AAG23387 Hypothetical protein Y73E7A.4 [Caenorhabditis elegans] ref|NP_490868.1| Y73E7A.4 [Caenorhabditis elegans] 8.0E-19
blast AAG23387 Hypothetical protein Y73E7A.4 [Caenorhabditis elegans] ref|NP_490868.1| Y73E7A.4 [Caenorhabditis elegans] 2.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR008849 EMBL-EBI Synaphin 1.9E-12
Pfam IPR008849 EMBL-EBI Synaphin 1.0E-20
Pfam IPR008849 EMBL-EBI Synaphin 1.3E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000007877 1 13-30
Sequence
Target Sequence 
>C. ELEGANS:179984_AT
gaagccgatcgtgagcgtatgcgtcagcaaatccggaacaagtacaacttgaaaaagaag
gaagaagcacgcgagcaagaaattgcaggacggattgctggcaatcgcaagactccggag
caagttgcgttggaaacgttgaacgccgaagaagacgagggaatcatgtcggctatcaat
gacacgtatgaaaaagccaagagcacagttgcctcagcgtgctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCGATCGTGAGCGTATGCGTC 621 343 16 Antisense
TATGCGTCAGCAAATCCGGAACAAG 247 651 33 Antisense
GAAGGAAGAAGCACGCGAGCAAGAA 470 333 72 Antisense
GAAATTGCAGGACGGATTGCTGGCA 261 363 94 Antisense
TGGCAATCGCAAGACTCCGGAGCAA 223 547 114 Antisense
GACTCCGGAGCAAGTTGCGTTGGAA 475 373 126 Antisense
GTTGAACGCCGAAGAAGACGAGGGA 335 439 153 Antisense
GACGAGGGAATCATGTCGGCTATCA 190 379 169 Antisense
GTCGGCTATCAATGACACGTATGAA 585 471 183 Antisense
AAGCCAAGAGCACAGTTGCCTCAGC 319 149 209 Antisense
GAGCACAGTTGCCTCAGCGTGCTCA 190 389 216 Antisense
Sequence Source Affymetrix Proprietary Database