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[179983_at]

Description F35A5.3 /REP_DB=WormBase Gene ID /WP=CE04487 /TR=Q20002 /GB=AAB52643.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 34      6grp_highest_nonorm > 31      6grp_total > 01      4grp_total > 50      6grp_highest_sub > 02      6grp_cgc > 53      6grp_high1_sub > 02      6grp_cgc_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2336
1 2 3 4 range
A 102.7
(-3)
A 		2406.6
(3)
P 		1690.4
(1.1)
P 		180.4
(-2.8)
P 		2304
B 82.4
(-3)
A 		2399.6
(3)
P 		1711.1
(1.2)
P 		70.9
(-3)
A 		2329
C 85.6
(-3)
A 		2235.2
(3)
P 		1445.2
(0.8)
P 		116.7
(-2.9)
P 		2150
avr 90.2
(-3) 		2347.1
(3) 		1615.6
(1.1) 		122.7
(-2.9) 		2257

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1038
1 2 3 4 5 6 range
A 1053.7
(-0.1)
P 		1504.4
(3)
P 		620.7
(-3)
P 		653.8
(-2.8)
P 		940.6
(-0.8)
P 		1033.7
(-0.2)
P 		884
B 966
(-0.8)
P 		1493.3
(3)
P 		784.8
(-2)
P 		651.4
(-3)
P 		767.8
(-2.2)
P 		686.2
(-2.8)
P 		842
C 792.8
(-0.9)
P 		1381.2
(3)
P 		728
(-1.3)
P 		466.8
(-3)
P 		1052.3
(0.8)
P 		630.1
(-1.9)
P 		914
avr 937.5
(-0.6) 		1459.6
(3) 		711.2
(-2.2) 		590.7
(-3) 		920.2
(-0.7) 		783.3
(-1.7) 		869
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 628
1 2 3 4 range
A 37.4
(-2.9)
A 		522.4
(3)
P 		441.9
(2)
P 		26.4
(-3)
P 		496
B 26.3
(-2.9)
A 		592.6
(3)
P 		396.5
(1)
P 		15.1
(-3)
A 		578
C 28.3
(-2.9)
A 		642.6
(3)
P 		503.7
(1.7)
P 		19.7
(-3)
P 		623
avr 30.7
(-2.9) 		585.9
(3) 		447.4
(1.5) 		20.4
(-3) 		566

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 441
1 2 3 4 5 6 range
A 194.2
(-2.1)
P 		535.1
(3)
P 		135.2
(-3)
P 		165.8
(-2.5)
P 		283.8
(-0.8)
P 		251.7
(-1.3)
P 		400
B 336.1
(0)
P 		497.1
(3)
P 		190.6
(-2.7)
P 		172.5
(-3)
P 		312
(-0.4)
P 		255.9
(-1.5)
P 		325
C 293.9
(0.7)
P 		421.5
(3)
P 		185.3
(-1.3)
P 		93.9
(-3)
P 		340.5
(1.5)
P 		210.9
(-0.9)
P 		328
avr 274.7
(-0.7) 		484.6
(3) 		170.4
(-2.5) 		144.1
(-3) 		312.1
(-0) 		239.5
(-1.3) 		341
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179983_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18449
Sequence Type Exemplar sequence
Representative Public ID F35A5.3 NCBI
Target Description F35A5.3 /REP_DB=WormBase Gene ID /WP=CE04487 /TR=Q20002 /GB=AAB52643.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076258(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076258 NCBI Caenorhabditis elegans Activated in Blocked Unfolded protein response family member (abu-10) (abu-10) mRNA, complete cds. 11/11 None
SNAP00000032203 ENSEMBL cdna:SNAP chromosome:CEL140:X:3798207:3799626:1 11/11 None
GENEFINDER00000032208 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3798207:3799626:1 11/11 None
F35A5.3 ENSEMBL cdna:known chromosome:CEL140:X:3798166:3799714:1 gene:F35A5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3798207-3799627(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol abu-10
Ensembl F35A5.3
Entrez Gene 185248 Entrez gene
SwissProt Q20002 EMBL-EBI
WormBase CE04487 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52643 Activated in blocked unfolded protein response protein 10 [Caenorhabditis elegans] ref|NP_508659.1| Activated in Blocked Unfolded protein response family member (abu-10) [Caenorhabditis elegans] 2.0E-35
blast CAE68485 Hypothetical protein CBG14287 [Caenorhabditis briggsae] 6.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR009475 EMBL-EBI Protein of unknown function DUF1096 1.4E-10
Sequence
Target Sequence 
>C. ELEGANS:179983_AT
caacagccagcttgcgattgtgctccagttcagcagaacccatgttgccaacaagctcag
ccagcctgtgattgcgctccagtccaacagcaaccatcttgcgattgcgctccagttcaa
cagaacccatgctgccaacaagctcagccagcctgcgactgtgccccagtccaacagcaa
ccagcctgtgattgtgctccagtccagcagaacccatgctgccaacaacaggctcagtca
acttgcgactgtgccccagttcaacagaacccgtgctgccaacaagctcagccagcttgt
gattgtgccccagttgttcagcaaaacccatgcgcttgccaacaggctcagccatcctgt
gattgcgcccaacaagctcagccaaccttccaagtccaagttcaacaagcgcaaccaatc
aatcagtgcgtcccagcttgccagccagcttgccagtcatcgtgcaccgcttcgtacacc
aaccaacaatcccaacattcgtcagctactacttcctgcgatgctaaccaatgcgtatgc
caacgcggatacgtcaagtgcgccgagcagacctgctgtcttaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACAGCCAGCTTGCGATTGTGCTC 578 189 514 Antisense
GTTCAGCAGAACCCATGTTGCCAAC 407 445 541 Antisense
CCATGCTGCCAACAAGCTCAGCCAG 498 271 640 Antisense
ACAACAGGCTCAGTCAACTTGCGAC 692 111 738 Antisense
GTGCCCCAGTTGTTCAGCAAAACCC 174 479 818 Antisense
CCAACAGGCTCAGCCATCCTGTGAT 85 277 852 Antisense
CAACCTTCCAAGTCCAAGTTCAACA 181 187 896 Antisense
GCAACCAATCAATCAGTGCGTCCCA 533 319 924 Antisense
TACTACTTCCTGCGATGCTAACCAA 580 645 1020 Antisense
CGCGGATACGTCAAGTGCGCCGAGC 447 247 1057 Antisense
CGCCGAGCAGACCTGCTGTCTTAGA 490 255 1074 Antisense
Sequence Source Affymetrix Proprietary Database