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[179982_at]

Description T24A11.2 /REP_DB=WormBase Gene ID /WP=CE02358 /TR=Q22709 /GB=CAA88881.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 06      6grp_total_sub > Hat      6grp_cgc > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 55.1
(0)
A 		31.8
(-1.8)
A 		15.8
(-3)
A 		94.3
(3)
A 		79
B 66.2
(-0)
A 		37.6
(-3)
A 		95.2
(3)
A 		67.6
(0.1)
A 		58
C 57.9
(-0.3)
A 		75
(3)
A 		64.6
(1)
A 		43.6
(-3)
A 		31
avr 59.7
(0.4) 		48.1
(-3) 		58.5
(0.1) 		68.5
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 7.3
(-2.5)
A 		45.4
(2)
A 		54.4
(3)
A 		2.7
(-3)
A 		45.9
(2)
A 		35.9
(0.9)
A 		52
B 33.2
(1.3)
A 		43.3
(3)
A 		33.7
(1.4)
A 		7.1
(-3)
A 		21
(-0.7)
A 		12.3
(-2.1)
A 		36
C 5.8
(-2.9)
A 		65.8
(3)
A 		8.5
(-2.6)
A 		9.3
(-2.5)
A 		48.1
(1.3)
A 		4.3
(-3)
A 		62
avr 15.4
(-1.8) 		51.5
(3) 		32.2
(0.4) 		6.4
(-3) 		38.3
(1.2) 		17.5
(-1.5) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 20.1
(3)
A 		6.9
(-2)
A 		4.1
(-3)
A 		13.8
(0.6)
A 		16
B 21.1
(2.5)
A 		9.3
(-3)
A 		22.1
(3)
A 		14.4
(-0.6)
A 		13
C 19.2
(1.7)
A 		21.5
(2.6)
A 		22.5
(3)
A 		7.4
(-3)
A 		15
avr 20.1
(3) 		12.6
(-2.5) 		16.2
(0.1) 		11.9
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.3
(-2.8)
A 		16.1
(3)
A 		11.9
(1.4)
A 		0.7
(-3)
A 		13.9
(2.1)
A 		8.8
(0.2)
A 		15
B 11.6
(1.7)
A 		14.4
(3)
A 		8.2
(0)
A 		1.9
(-3)
A 		8.5
(0.2)
A 		4.6
(-1.7)
A 		13
C 2.2
(-2.7)
A 		20.1
(3)
A 		2.2
(-2.7)
A 		1.9
(-2.8)
A 		15.6
(1.6)
A 		1.4
(-3)
A 		19
avr 5
(-1.6) 		16.9
(3) 		7.4
(-0.7) 		1.5
(-3) 		12.7
(1.4) 		4.9
(-1.7) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179982_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6916
Sequence Type Exemplar sequence
Representative Public ID T24A11.2 NCBI
Target Description T24A11.2 /REP_DB=WormBase Gene ID /WP=CE02358 /TR=Q22709 /GB=CAA88881.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065367(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065367 NCBI Caenorhabditis elegans X-BoX promoter element regulated family member (xbx-5) (xbx-5) mRNA, complete cds. 11/11 None
SNAP00000027678 ENSEMBL cdna:SNAP chromosome:CEL140:III:3802554:3804345:-1 11/11 None
GENEFINDER00000027684 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3802554:3803266:-1 11/11 None
T24A11.2 ENSEMBL cdna:known chromosome:CEL140:III:3802554:3804345:-1 gene:T24A11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3802553-3804345(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol xbx-5
Ensembl T24A11.2
Entrez Gene 188837 Entrez gene
SwissProt Q22709 EMBL-EBI
WormBase CE34097 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88881 Hypothetical protein T24A11.2 [Caenorhabditis elegans] ref|NP_497768.2| X-BoX promoter element regulated family member (xbx-5) [Caenorhabditis elegans] 0.0
blast CAE64501 Hypothetical protein CBG09228 [Caenorhabditis briggsae] 1.0E-120
blast CAA88881 Hypothetical protein T24A11.2 [Caenorhabditis elegans] ref|NP_497768.2| X-BoX promoter element regulated family member (xbx-5) [Caenorhabditis elegans] 1.0E-110
blast CAE64501 Hypothetical protein CBG09228 [Caenorhabditis briggsae] 1.0E-63
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497768.2 7 4-23,35-57,87-109,122-144,154-176,197-219,234-253
T24A11.2 7 4-23,35-57,87-109,122-144,154-176,197-219,234-253
SNAP00000027678 7 4-23,35-57,87-109,122-144,154-176,197-219,234-253
GENEFINDER00000027684 4 5-24,34-53,74-96,111-130
Sequence
Target Sequence 
>C. ELEGANS:179982_AT
atggcattctacaacggagcatttgatgtgcatgagaaaatgagatttgttccgaactat
ccgtttttgatgctaaacttgggacatctcatgttcatctttgcacttgcttggggaact
atgaaaattaaaaatctcacggaaccaactgataatcaagctgaagccattcgtcagttc
caatctcttcaaatcttcggtctcatcacttcggtcccaatgctctacatgcaattccaa
atgttctcaactcattcttcccgcttcctgttctccgactacgattgcttcgtccgtctc
gtcttcctcgccgcagttctccttctcgaaccattcaacagtcgcttccgcttccgtgaa
cgtttctaccgtaccgctcacgaatctccaattgccccggctccagatgccgtgcaagtt
gtgaagccgctcccaagaaagatggtagaaacaatagttaattctaattttataacagta
gttttccagaacatcgacgaaatgactccaaactacggaaatgctccaccagcctacgac
gacgcccaatctcttcccacttcatggaccataactcccccatcgaaagaatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCATTCTACAACGGAGCATTTG 593 51 424 Antisense
GTTCCGAACTATCCGTTTTTGATGC 584 441 472 Antisense
GGACATCTCATGTTCATCTTTGCAC 277 525 505 Antisense
TTTGCACTTGCTTGGGGAACTATGA 565 665 523 Antisense
CTGAAGCCATTCGTCAGTTCCAATC 197 237 584 Antisense
TCTCGAACCATTCAACAGTCGCTTC 591 609 747 Antisense
GGCTCCAGATGCCGTGCAAGTTGTG 9 541 822 Antisense
GTTGTGAAGCCGCTCCCAAGAAAGA 296 437 841 Antisense
ATCGACGAAATGACTCCAAACTACG 659 35 916 Antisense
CTCTTCCCACTTCATGGACCATAAC 310 223 974 Antisense
CATAACTCCCCCATCGAAAGAATAC 81 203 993 Antisense
Sequence Source Affymetrix Proprietary Database