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[179981_at]

Description K06A5.3 /REP_DB=WormBase Gene ID /WP=CE11772 /TR=O44550 /GB=AAK21432.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 1.4
(-3)
A 		1.7
(-3)
A 		4.8
(-2.8)
A 		119.1
(3)
A 		118
B 2.4
(-3)
A 		5.6
(2.6)
A 		2.7
(-2.5)
A 		5.8
(3)
A 		3
C 5.7
(-2.9)
A 		24.9
(-1.4)
A 		4
(-3)
A 		80
(3)
P 		76
avr 3.2
(-3) 		10.7
(-2.3) 		3.8
(-2.9) 		68.3
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 6.9
(-2.9)
A 		5.2
(-3)
A 		54.1
(-1.2)
A 		5.3
(-3)
A 		81.4
(-0.1)
A 		163.9
(3)
A 		159
B 2.8
(-3)
A 		20
(-2.4)
A 		37.1
(-1.7)
A 		33.5
(-1.9)
A 		72.3
(-0.4)
A 		164
(3)
P 		161
C 1.3
(-3)
A 		2.4
(-3)
A 		2.7
(-3)
A 		25.5
(-2.2)
A 		56.4
(-1.1)
A 		179.8
(3)
P 		179
avr 3.7
(-3) 		9.2
(-2.8) 		31.3
(-2) 		21.4
(-2.4) 		70
(-0.6) 		169.2
(3) 		166
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 0.5
(-3)
A 		0.4
(-3)
A 		1.3
(-2.7)
A 		17.4
(3)
A 		17
B 0.8
(-1.5)
A 		1.4
(3)
A 		0.6
(-3)
A 		1.2
(1.5)
A 		1
C 1.9
(-2.8)
A 		7.2
(-0.1)
A 		1.4
(-3)
A 		13.5
(3)
P 		12
avr 1.1
(-3) 		3
(-1.8) 		1.1
(-3) 		10.7
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 1.3
(-3)
A 		1.9
(-2.9)
A 		11.8
(-1.4)
A 		1.3
(-3)
A 		24.6
(0.6)
A 		39.9
(3)
A 		39
B 1
(-3)
A 		6.6
(-2.4)
A 		9
(-2.2)
A 		8.9
(-2.2)
A 		29.4
(-0.2)
A 		61.2
(3)
P 		60
C 0.5
(-3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		5.1
(-2.5)
A 		18.2
(-1.2)
A 		60.2
(3)
P 		60
avr 0.9
(-3) 		3.1
(-2.8) 		7.2
(-2.3) 		5.1
(-2.5) 		24.1
(-0.4) 		53.8
(3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179981_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.652
Sequence Type Exemplar sequence
Representative Public ID K06A5.3 NCBI
Target Description K06A5.3 /REP_DB=WormBase Gene ID /WP=CE11772 /TR=O44550 /GB=AAK21432.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059459(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059459 NCBI Caenorhabditis elegans K06A5.3 (K06A5.3) mRNA, complete cds. 11/11 None
SNAP00000044598 ENSEMBL cdna:SNAP chromosome:CEL140:I:6474985:6475619:1 11/11 None
GENEFINDER00000044608 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6474985:6475619:1 11/11 None
K06A5.3 ENSEMBL cdna:known chromosome:CEL140:I:6474985:6475650:1 gene:K06A5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6474913-6475548(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K06A5.3
Entrez Gene 172352 Entrez gene
SwissProt O44550 EMBL-EBI
WormBase CE11772 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK21432 Hypothetical protein K06A5.3 [Caenorhabditis elegans] ref|NP_491860.1| K06A5.3 [Caenorhabditis elegans] 2.0E-68
blast CAE67198 Hypothetical protein CBG12634 [Caenorhabditis briggsae] 2.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 6.1E-23
Sequence
Target Sequence 
>C. ELEGANS:179981_AT
tcccggatttccaaacgattttcatgctttcgaagtgtcgccaattccattcgacataaa
ctctaaagagctttcattgaaaaatcactcgaatcgcgctattttgttcaaggtaaaatg
cacaaataacaagaggattagaatcgaagaatgctcggatatactgaaacctggtaacga
gacaacggccactatcaaaaaactggttgacacagtagacggcgattcactttatgtcat
ttacactttagttggaaaagagtggcacaatgagcgaatgtctgcatggcgatgctggga
gagagcaaagaagcaggctgtaccgacgcaatgcatatcagttccaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCGGATTTCCAAACGATTTTCAT 198 595 33 Antisense
TGCTTTCGAAGTGTCGCCAATTCCA 413 579 57 Antisense
GCCAATTCCATTCGACATAAACTCT 503 277 72 Antisense
AAATCACTCGAATCGCGCTATTTTG 225 117 114 Antisense
ATGCTCGGATATACTGAAACCTGGT 29 41 183 Antisense
TAACGAGACAACGGCCACTATCAAA 599 637 207 Antisense
TGGTTGACACAGTAGACGGCGATTC 552 549 236 Antisense
ACGGCGATTCACTTTATGTCATTTA 533 95 251 Antisense
GAGCGAATGTCTGCATGGCGATGCT 319 379 304 Antisense
AAGAAGCAGGCTGTACCGACGCAAT 572 151 340 Antisense
GACGCAATGCATATCAGTTCCAATC 232 381 357 Antisense
Sequence Source Affymetrix Proprietary Database