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[179980_at]

Description F48C11.2 /REP_DB=WormBase Gene ID /WP=CE10750 /TR=Q93744 /GB=CAB02551.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 16.2
(-3)
A 		20.2
(-2.6)
A 		18.1
(-2.8)
A 		76.1
(3)
A 		60
B 9.6
(-2.7)
A 		10.8
(-2)
A 		19.2
(3)
A 		9.1
(-3)
A 		10
C 11.6
(-2.8)
A 		13.9
(-2.6)
A 		8.9
(-3)
A 		85.8
(3)
A 		77
avr 12.5
(-3) 		15
(-2.7) 		15.4
(-2.6) 		57
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 17.1
(3)
A 		9.1
(-1)
A 		5.1
(-3)
A 		8.6
(-1.3)
A 		12.5
(0.7)
A 		8.3
(-1.4)
A 		12
B 20
(3)
A 		8.5
(-3)
A 		10.4
(-2)
A 		8.6
(-2.9)
A 		12.1
(-1.1)
A 		9.1
(-2.7)
A 		12
C 12.5
(-1.6)
A 		11.8
(-1.8)
A 		8.5
(-2.5)
A 		35.2
(3)
A 		6.4
(-2.9)
A 		5.9
(-3)
A 		29
avr 16.5
(2.4) 		9.8
(-1.8) 		8
(-2.9) 		17.5
(3) 		10.3
(-1.5) 		7.8
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 5.9
(-1.7)
A 		4.4
(-3)
A 		4.7
(-2.7)
A 		11.1
(3)
A 		7
B 3.1
(-0.1)
A 		2.7
(-1.1)
A 		4.4
(3)
A 		1.9
(-3)
A 		3
C 3.8
(-2.6)
A 		4
(-2.5)
A 		3.1
(-3)
A 		14.5
(3)
A 		11
avr 4.3
(-2.3) 		3.7
(-3) 		4.1
(-2.6) 		9.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 3.1
(1.4)
A 		3.3
(1.9)
A 		1.1
(-3)
A 		2.2
(-0.6)
A 		3.8
(3)
A 		2
(-1)
A 		3
B 7
(3)
A 		2.8
(-2.4)
A 		2.5
(-2.7)
A 		2.3
(-3)
A 		4.9
(0.3)
A 		3.4
(-1.6)
A 		5
C 4.6
(0.1)
A 		3.6
(-1.1)
A 		2.2
(-2.8)
A 		7.1
(3)
A 		2.1
(-2.9)
A 		2
(-3)
A 		5
avr 4.9
(3) 		3.2
(-0.4) 		1.9
(-3) 		3.9
(1) 		3.6
(0.4) 		2.5
(-1.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179980_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17554
Sequence Type Exemplar sequence
Representative Public ID F48C11.2 NCBI
Target Description F48C11.2 /REP_DB=WormBase Gene ID /WP=CE10750 /TR=Q93744 /GB=CAB02551.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077787(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077787 NCBI Caenorhabditis elegans F48C11.2 (F48C11.2) mRNA, complete cds. 11/11 None
GENEFINDER00000030517 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13182383:13187617:-1 11/11 None
SNAP00000030513 ENSEMBL cdna:SNAP chromosome:CEL140:X:13183150:13187105:-1 9/11 None
F48C11.2 ENSEMBL cdna:known chromosome:CEL140:X:13182383:13187105:-1 gene:F48C11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13182382-13187105(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48C11.2
Entrez Gene 185977 Entrez gene
SwissProt Q93744 EMBL-EBI
WormBase CE10750 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02551 Hypothetical protein F48C11.2 [Caenorhabditis elegans] ref|NP_510188.1| F48C11.2 [Caenorhabditis elegans] 0.0
blast CAE61395 Hypothetical protein CBG05251 [Caenorhabditis briggsae] 0.0
blast CAE61395 Hypothetical protein CBG05251 [Caenorhabditis briggsae] 1.0E-170
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510188.1 1 269-291
F48C11.2 1 269-291
GENEFINDER00000030517 1 320-342
SNAP00000030513 1 269-291
Sequence
Target Sequence 
>C. ELEGANS:179980_AT
tgcctcctccagtaatgcagcagaagccgaacaatgcttcgaataatgaggagtttgatc
catctggattaagatcaccaccaatcccagctggaaaaccaaataatggaaccccaaaaa
gaatgacattctccccaattgctgatgagtctgaggaagaaaatggagcacggattccgt
caccaccgcgtgagcgaagagcgtcgggtggaagaccaggaaacaatgacggaccgaatc
tgtctccaaatgcagctttagatcctcatccaacattgaagaatcagtatgtcattgaac
aattctttaacacaagactaggaaccgtcaaaaataaaacttccagacggctcaacgaaa
tgccatcgccaacccctgcgaatgcacctgttccttcaaaatctccggtttctggggcat
cgaacaatccttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCTCCTCCAGTAATGCAGCAGAA 476 585 1526 Antisense
TCACCACCAATCCCAGCTGGAAAAC 708 625 1600 Antisense
GACATTCTCCCCAATTGCTGATGAG 386 371 1650 Antisense
AATGGAGCACGGATTCCGTCACCAC 271 163 1687 Antisense
ACCACCGCGTGAGCGAAGAGCGTCG 425 83 1707 Antisense
CAATGACGGACCGAATCTGTCTCCA 416 181 1749 Antisense
AAATGCAGCTTTAGATCCTCATCCA 321 119 1773 Antisense
GCTCAACGAAATGCCATCGCCAACC 18 303 1875 Antisense
CACCTGTTCCTTCAAAATCTCCGGT 384 201 1910 Antisense
TCAAAATCTCCGGTTTCTGGGGCAT 561 627 1921 Antisense
TCTGGGGCATCGAACAATCCTTTTG 186 609 1936 Antisense
Sequence Source Affymetrix Proprietary Database