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[179979_at]

Description F27D9.3 /REP_DB=WormBase Gene ID /WP=CE02700 /TR=Q19840 /GB=AAA93382.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 43      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 13.7
(3)
A 		13.6
(2)
A 		13.7
(3)
A 		13.1
(-3)
A 		1
B 5
(-3)
A 		27.1
(3)
A 		6.8
(-2.5)
A 		8.2
(-2.1)
A 		22
C 3.6
(-3)
A 		17.1
(3)
A 		8.1
(-1)
A 		6.1
(-1.9)
A 		14
avr 7.4
(-3) 		19.3
(3) 		9.5
(-1.9) 		9.1
(-2.1) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 6.4
(-3)
A 		7.9
(-2.3)
A 		7.7
(-2.4)
A 		19.3
(3)
A 		11.7
(-0.5)
A 		11.7
(-0.5)
A 		13
B 4.7
(-3)
A 		11.5
(0.2)
A 		17.3
(3)
A 		13.3
(1.1)
A 		7.2
(-1.8)
A 		8.4
(-1.2)
A 		13
C 12.1
(-0.8)
A 		12.3
(-0.8)
A 		12.9
(-0.5)
A 		22.3
(3)
A 		10.3
(-1.5)
A 		6.4
(-3)
A 		16
avr 7.7
(-3) 		10.6
(-1.4) 		12.6
(-0.2) 		18.3
(3) 		9.7
(-1.9) 		8.8
(-2.4) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 5
(3)
A 		3
(-0.9)
A 		3.6
(0.3)
A 		1.9
(-3)
A 		3
B 1.6
(-3)
A 		6.7
(3)
A 		1.6
(-3)
A 		1.7
(-2.9)
A 		5
C 1.2
(-2.7)
A 		4.9
(3)
A 		2.8
(-0.2)
A 		1
(-3)
A 		4
avr 2.6
(-1.1) 		4.9
(3) 		2.7
(-0.9) 		1.5
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.2
(-3)
A 		2.8
(-0.4)
A 		1.7
(-2.2)
A 		4.9
(3)
A 		3.5
(0.7)
A 		2.8
(-0.4)
A 		4
B 1.6
(-3)
A 		3.8
(2.1)
A 		4.2
(3)
A 		3.5
(1.4)
A 		2.9
(-0)
A 		3.1
(0.5)
A 		3
C 4.5
(3)
A 		3.7
(1)
A 		3.3
(-0)
A 		4.5
(3)
A 		3.3
(-0)
A 		2.1
(-3)
A 		2
avr 2.4
(-3) 		3.4
(0.2) 		3.1
(-0.8) 		4.3
(3) 		3.2
(-0.5) 		2.7
(-2.1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179979_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16678
Sequence Type Exemplar sequence
Representative Public ID F27D9.3 NCBI
Target Description F27D9.3 /REP_DB=WormBase Gene ID /WP=CE02700 /TR=Q19840 /GB=AAA93382.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076890(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076890 NCBI Caenorhabditis elegans F27D9.3 (F27D9.3) mRNA, complete cds. 11/11 None
SNAP00000002718 ENSEMBL cdna:SNAP chromosome:CEL140:X:7651170:7651487:1 10/11 None
F27D9.3 ENSEMBL cdna:known chromosome:CEL140:X:7651071:7651487:1 gene:F27D9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7651069-7651486(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F27D9.3
Entrez Gene 185017 Entrez gene
SwissProt Q19840 EMBL-EBI
WormBase CE02700 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93382 Hypothetical protein F27D9.3 [Caenorhabditis elegans] ref|NP_509291.1| F27D9.3 [Caenorhabditis elegans] 6.0E-64
blast AAA93382 Hypothetical protein F27D9.3 [Caenorhabditis elegans] ref|NP_509291.1| F27D9.3 [Caenorhabditis elegans] 1.0E-43
Sequence
Target Sequence 
>C. ELEGANS:179979_AT
tttcccgcctcgatgacgaagacgaaatggcggcgaagtgaccagcagaacgcgaaaaga
gtgtggacgctcgcggagagccgcacgtgggagcggcaaagacgggggaaattgtgcaag
actcccgcgaaacgcagaggcgtccggagaggagagggcggcagagttgaggaaggcgga
cgggagaagaagcagggcaagaagaacgaatgcgttagggaagcggacgacgcggttgac
gccaggccgcgtcccagcgataggggacgtctgagagtgttgctcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCCGCCTCGATGACGAAGACGA 613 667 100 Antisense
GGCGGCGAAGTGACCAGCAGAACGC 249 541 128 Antisense
AAAAGAGTGTGGACGCTCGCGGAGA 208 133 154 Antisense
CTCGCGGAGAGCCGCACGTGGGAGC 355 233 169 Antisense
GAAATTGTGCAAGACTCCCGCGAAA 324 363 207 Antisense
GACTCCCGCGAAACGCAGAGGCGTC 488 373 219 Antisense
GGCGTCCGGAGAGGAGAGGGCGGCA 650 541 238 Antisense
GGCGGCAGAGTTGAGGAAGGCGGAC 650 513 256 Antisense
AGGGAAGCGGACGACGCGGTTGACG 619 1 316 Antisense
GGCCGCGTCCCAGCGATAGGGGACG 425 541 344 Antisense
GGGGACGTCTGAGAGTGTTGCTCGA 152 497 362 Antisense
Sequence Source Affymetrix Proprietary Database