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[179978_at]

Description Y39E4B.1 /REP_DB=WormBase Gene ID /WP=CE21713 /TR=Q9U2K8 /GB=CAB54424.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 44      4grp_high_8_8 > 24      6grp_highest_nonorm > 70      6grp_total > 16      4grp_total > 39      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > Cu      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 346
1 2 3 4 range
A 812
(3)
P 		723.1
(-3)
P 		742.6
(-1.7)
P 		744.7
(-1.5)
P 		89
B 1024.6
(3)
P 		678.5
(-3)
P 		760.1
(-1.6)
P 		936.7
(1.5)
P 		346
C 939.3
(3)
P 		781.4
(-1.6)
P 		802.6
(-1)
P 		735.2
(-3)
P 		204
avr 925.3
(3) 		727.7
(-3) 		768.4
(-1.8) 		805.5
(-0.6) 		198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 340
1 2 3 4 5 6 range
A 469.5
(3)
P 		356.8
(0.4)
P 		221.5
(-2.8)
P 		237.1
(-2.4)
P 		213.1
(-3)
P 		273
(-1.6)
P 		256
B 402.7
(3)
P 		384.4
(2.3)
P 		235.8
(-3)
P 		294
(-0.9)
P 		248.4
(-2.5)
P 		273.4
(-1.6)
P 		167
C 553.3
(3)
P 		323.3
(-1.5)
P 		296.9
(-2)
P 		248.1
(-3)
P 		276.1
(-2.4)
P 		270.5
(-2.6)
P 		305
avr 475.2
(3) 		354.8
(-0.2) 		251.4
(-2.9) 		259.7
(-2.6) 		245.9
(-3) 		272.3
(-2.3) 		229
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 295.6
(3)
P 		157
(-1.5)
P 		194.1
(-0.3)
P 		109
(-3)
P 		187
B 326.7
(3)
P 		167.6
(-3)
P 		176.1
(-2.7)
P 		199.6
(-1.8)
P 		159
C 310.9
(3)
P 		224.6
(0.2)
P 		279.7
(2)
P 		124
(-3)
P 		187
avr 311.1
(3) 		183.1
(-1.6) 		216.6
(-0.4) 		144.2
(-3) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 86.5
(-0.1)
P 		126.9
(3)
P 		48.2
(-3)
P 		60.1
(-2.1)
P 		64.3
(-1.8)
P 		66.5
(-1.6)
P 		79
B 140.1
(3)
P 		127.9
(2.1)
P 		57.3
(-3)
P 		77.9
(-1.5)
P 		100.9
(0.2)
P 		102
(0.2)
P 		83
C 205.1
(3)
P 		98.6
(-1.1)
P 		75.6
(-2)
P 		49.9
(-3)
P 		89.3
(-1.5)
P 		90.6
(-1.4)
P 		155
avr 143.9
(3) 		117.8
(1.1) 		60.4
(-3) 		62.6
(-2.8) 		84.8
(-1.2) 		86.4
(-1.1) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179978_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6966
Sequence Type Exemplar sequence
Representative Public ID Y39E4B.1 NCBI
Target Description Y39E4B.1 /REP_DB=WormBase Gene ID /WP=CE21713 /TR=Q9U2K8 /GB=CAB54424.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067316(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067316 NCBI Caenorhabditis elegans Y39E4B.1 (Y39E4B.1) mRNA, complete cds. 11/11 None
SNAP00000012013 ENSEMBL cdna:SNAP chromosome:CEL140:III:13139109:13159425:1 11/11 None
GENEFINDER00000012037 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13153349:13159425:1 11/11 None
Y39E4B.1 ENSEMBL cdna:known chromosome:CEL140:III:13153333:13159773:1 gene:Y39E4B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13153344-13159421(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-351
Ensembl Y39E4B.1
Entrez Gene 176733 Entrez gene
SwissProt Q9U2K8 EMBL-EBI
WormBase CE21713 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:19678_G_AT RNase L inhibitor protein, putative at
ATGENOME1:19470_AT RNase L inhibitor protein, putative at
ATH1-121501:254615_AT RNase L inhibitor protein, putative at
CANINE_2:CFA.19800.1.S1_S_AT similar to ATP-binding cassette sub-family E member 1 (RNase L inhibitor) (Ribonuclease 4 inhibitor) (RNS4I) cfa
CANINE_2:CFA.20953.1.S1_S_AT similar to ATP-binding cassette sub-family E member 1 (RNase L inhibitor) (Ribonuclease 4 inhibitor) (RNS4I) cfa
CANINE_2:CFAAFFX.12261.1.S1_AT similar to ATP-binding cassette sub-family E member 1 (RNase L inhibitor) (Ribonuclease 4 inhibitor) (RNS4I) cfa
DROSOPHILA_2:1638274_S_AT dm
DROSGENOME1:148436_AT dm
CHICKEN:GGAAFFX.12411.1.S1_S_AT ATP-binding cassette, sub-family E (OABP), member 1 gga
HG-U133_PLUS_2:201873_S_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HG-U133A:201873_S_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HG-U133A_2:201873_S_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HU35KSUBB:RC_AA223912_S_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HU35KSUBC:RC_R50976_S_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HUGENEFL:X74987_S_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
U133_X3P:G4506558_3P_A_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
U133_X3P:HS.12013.0.A1_3P_A_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HG-U133A_2:201872_S_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HG-FOCUS:201872_S_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HG-U133_PLUS_2:201872_S_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HG-U133A:201872_S_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HG-U95AV2:39355_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HG-U95B:54271_R_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HG-U95E:70145_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
U133_X3P:HS.42788.0.A1_3P_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
MU11KSUBA:AA674093_AT ATP-binding cassette, sub-family E (OABP), member 1 mm
MG-U74AV2:100568_AT ATP-binding cassette, sub-family E (OABP), member 1 mm
MG-U74CV2:169106_AT ATP-binding cassette, sub-family E (OABP), member 1 mm
MOE430A:1416015_S_AT ATP-binding cassette, sub-family E (OABP), member 1 mm
MOUSE430A_2:1416015_S_AT ATP-binding cassette, sub-family E (OABP), member 1 mm
MOUSE430_2:1416015_S_AT ATP-binding cassette, sub-family E (OABP), member 1 mm
MOE430A:1416014_AT ATP-binding cassette, sub-family E (OABP), member 1 mm
MOUSE430A_2:1416014_AT ATP-binding cassette, sub-family E (OABP), member 1 mm
MOUSE430_2:1416014_AT ATP-binding cassette, sub-family E (OABP), member 1 mm
MOE430B:1442071_AT ATP-binding cassette, sub-family E (OABP), member 1, mRNA (cDNA clone MGC:5781 IMAGE:3489529) mm
MOUSE430_2:1442071_AT ATP-binding cassette, sub-family E (OABP), member 1, mRNA (cDNA clone MGC:5781 IMAGE:3489529) mm
MU11KSUBA:AA408828_RC_AT ATP-binding cassette, sub-family E (OABP), member 1, mRNA (cDNA clone MGC:5781 IMAGE:3489529) mm
MU19KSUBA:TC17503_AT ATP-binding cassette, sub-family E (OABP), member 1, mRNA (cDNA clone MGC:5781 IMAGE:3489529) mm
RG-U34C:RC_AI169111_AT ATP-binding cassette, sub-family E (OABP), member 1 (predicted) rn
RAE230A:1388810_AT ATP-binding cassette, sub-family E (OABP), member 1 (predicted) rn
RAT230_2:1388810_AT ATP-binding cassette, sub-family E (OABP), member 1 (predicted) rn
YEAST_2:1778038_AT Essential iron-sulfur protein required for ribosome biogenesis and translation initiation; facilitates binding of a multifactor complex (MFC) of translation initiation factors to the small ribosomal subunit; predicted ABC family ATPase Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
5506 iron ion binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54424 Hypothetical protein Y39E4B.1 [Caenorhabditis elegans] ref|NP_499717.1| Y39E4B.1 [Caenorhabditis elegans] 0.0
blast CAE75081 Hypothetical protein CBG22999 [Caenorhabditis briggsae] 0.0
blast XP_623630 PREDICTED: similar to ribonuclease L inhibitor homolog [Apis mellifera] 0.0
blast EAL31227 GA19033-PA [Drosophila pseudoobscura] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001450 EMBL-EBI 4Fe-4S ferredoxin, iron-sulfur binding domain 7.8E-9
Pfam IPR007209 EMBL-EBI Possible metal-binding region in RNase L inhibitor, RLI 1.4E-14
Pfam IPR003439 EMBL-EBI ABC transporter 1.2E-18
Pfam IPR003439 EMBL-EBI ABC transporter 1.4E-26
Pfam IPR001450 EMBL-EBI 4Fe-4S ferredoxin, iron-sulfur binding domain 7.8E-9
Pfam IPR003439 EMBL-EBI ABC transporter 1.2E-18
Pfam IPR003439 EMBL-EBI ABC transporter 1.4E-26
Sequence
Target Sequence 
>C. ELEGANS:179978_AT
tacaagccgcagaagatctcaccgaaatctgagactactgtacgcttcatgcttcacgat
aagattcagaacatgtacgagcatccacaattcaagacggatgtgatgaatccgttgatg
atggaacagttgttggatcgaaatgtgaaagaactttcgggaggagaattacaacgtgtc
gctcttgccctttgcctcggaaaaaccgccagtttgtaccttatcgatgagccatcagct
tacctggattcggagcaacgtcttcacgcggcaaaagtgatcaaaagattcattatgcat
gccaagaagacggcgtttgttgtcgagcacgatttcattatggctacctatttggccgac
agagtcgtcgttttcgaaggtcaaccgtcggtcaagtgtacggcttgcaaaccccaatcc
ctgctggaaggaatgaatcgattcttgaaaatgttggatatcactttccgtcgtgatcag
gaaacatatcgcccacgcatcaataaactcgactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAAGCCGCAGAAGATCTCACCGA 654 641 1273 Antisense
TACTGTACGCTTCATGCTTCACGAT 462 645 1308 Antisense
GTACGAGCATCCACAATTCAAGACG 269 459 1347 Antisense
AGAATTACAACGTGTCGCTCTTGCC 333 71 1437 Antisense
GTTTGTACCTTATCGATGAGCCATC 552 449 1484 Antisense
TGAGCCATCAGCTTACCTGGATTCG 580 569 1500 Antisense
CTGGATTCGGAGCAACGTCTTCACG 637 239 1516 Antisense
AAGACGGCGTTTGTTGTCGAGCACG 448 151 1579 Antisense
TATGGCTACCTATTTGGCCGACAGA 678 653 1611 Antisense
ATGTTGGATATCACTTTCCGTCGTG 176 47 1723 Antisense
GCCCACGCATCAATAAACTCGACTC 555 285 1763 Antisense
Sequence Source Affymetrix Proprietary Database