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[179976_at]

Description Y68A4A.7 /REP_DB=WormBase Gene ID /WP=CE19258 /TR=Q9XXQ1 /GB=CAA16418.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 02      6grp_cgc > 98      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 3.7
(-3)
A 		3.4
(-3)
A 		5.1
(-2.9)
A 		75.6
(3)
A 		72
B 5.8
(3)
A 		2.5
(-2.7)
A 		2.3
(-3)
A 		5.3
(2.1)
A 		4
C 4.4
(-2.8)
A 		3.8
(-2.9)
A 		1.8
(-3)
A 		86.5
(3)
A 		85
avr 4.6
(-2.8) 		3.2
(-3) 		3.1
(-3) 		55.8
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 4.8
(-0.7)
A 		2.2
(-2.9)
A 		5.3
(-0.3)
A 		4.1
(-1.3)
A 		9.2
(3)
A 		2.1
(-3)
A 		7
B 1.8
(-0.4)
A 		2
(0.4)
A 		1.5
(-1.7)
A 		2
(0.4)
A 		2.6
(3)
A 		1.2
(-3)
A 		1
C 2.8
(1.7)
A 		2.9
(2.3)
A 		2.1
(-3)
A 		2.9
(2.3)
A 		2.6
(0.3)
A 		3
(3)
A 		1
avr 3.1
(-0.8) 		2.4
(-2.3) 		3
(-1) 		3
(-1) 		4.8
(3) 		2.1
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.3
(-2.7)
A 		0.7
(-3)
A 		1.3
(-2.7)
A 		11.1
(3)
A 		10
B 1.9
(3)
A 		0.6
(-2.6)
A 		0.5
(-3)
A 		1.1
(-0.4)
A 		1
C 1.4
(-2.7)
A 		1.1
(-2.8)
A 		0.6
(-3)
A 		14.6
(3)
A 		14
avr 1.5
(-2.5) 		0.8
(-3) 		0.8
(-3) 		8.9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.9
(-2)
A 		0.8
(-2.2)
A 		1.2
(-1.2)
A 		1
(-1.7)
A 		2.8
(3)
A 		0.5
(-3)
A 		2
B 0.6
(-1.3)
A 		0.7
(-0.4)
A 		0.4
(-3)
A 		0.5
(-2.1)
A 		1.1
(3)
A 		0.4
(-3)
A 		1
C 1
(3)
A 		0.9
(1.8)
A 		0.5
(-3)
A 		0.6
(-1.8)
A 		0.9
(1.8)
A 		1
(3)
A 		1
avr 0.8
(-1.8) 		0.8
(-1.8) 		0.7
(-2.4) 		0.7
(-2.4) 		1.6
(3) 		0.6
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179976_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12779
Sequence Type Exemplar sequence
Representative Public ID Y68A4A.7 NCBI
Target Description Y68A4A.7 /REP_DB=WormBase Gene ID /WP=CE19258 /TR=Q9XXQ1 /GB=CAA16418.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074958(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074958 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-113) (srh-113) mRNA, complete cds. 11/11 None
Y68A4A.7 ENSEMBL cdna:known chromosome:CEL140:V:17215620:17216789:1 gene:Y68A4A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17215619-17216789(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-113
Ensembl Y68A4A.7
Entrez Gene 190527 Entrez gene
SwissProt Q9XXQ1 EMBL-EBI
WormBase CE19258 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16418 Hypothetical protein Y68A4A.7 [Caenorhabditis elegans] ref|NP_507359.1| Serpentine Receptor, class H family member (srh-113) [Caenorhabditis elegans] 0.0
blast CAB04557 Hypothetical protein K03D7.6 [Caenorhabditis elegans] ref|NP_507433.1| Serpentine Receptor, class H family member (srh-118) [Caenorhabditis elegans] 1.0E-127
blast CAA16414 Hypothetical protein Y61B8A.1 [Caenorhabditis elegans] ref|NP_507371.2| Serpentine Receptor, class H family member (srh-116) [Caenorhabditis elegans] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507359.1 7 31-53,66-88,108-130,151-170,212-234,255-277,292-314
Y68A4A.7 7 31-53,66-88,108-130,151-170,212-234,255-277,292-314
Sequence
Target Sequence 
>C. ELEGANS:179976_AT
ggctagttccaattggggcatttcatttgctaatctttccactgtttcaagtggctactc
tcatttactacatttgcattgcgccttcgaaaacgacttcaaaggatactcagaataaac
aaaaagtttttctcttctgcattttgtttcaaacttcagttccaataattctcggcgtct
gcccattgtctttatgttgtattgcctatgcgagcggtcattattcccagggaatgatga
atattgtagtttgttgtatcgggcttcacggtttgacagaaagtattgcaattttgactg
tgcatagaccttacagaaaagctattggtcatatgttttccgagttgaaaaaaaagagat
gtttgcttcaagtgtcatcattcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTAGTTCCAATTGGGGCATTTCA 99 531 650 Antisense
ACTGTTTCAAGTGGCTACTCTCATT 399 97 690 Antisense
GGCTACTCTCATTTACTACATTTGC 675 537 702 Antisense
TTGCATTGCGCCTTCGAAAACGACT 585 685 723 Antisense
TCAGTTCCAATAATTCTCGGCGTCT 449 623 805 Antisense
GTCTGCCCATTGTCTTTATGTTGTA 291 471 826 Antisense
GTTGTATTGCCTATGCGAGCGGTCA 503 437 845 Antisense
CTATGCGAGCGGTCATTATTCCCAG 570 223 855 Antisense
TGTATCGGGCTTCACGGTTTGACAG 650 559 904 Antisense
GCTATTGGTCATATGTTTTCCGAGT 111 305 970 Antisense
TTTGCTTCAAGTGTCATCATTCCCC 407 667 1011 Antisense
Sequence Source Affymetrix Proprietary Database