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[179975_at]

Description F59D12.5 /REP_DB=WormBase Gene ID /WP=CE19909 /TR=Q9XTE3 /GB=CAA19427.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 57.9
(3)
A 		31.3
(-0.4)
A 		10.2
(-3)
A 		58.3
(3)
A 		48
B 36.4
(-1.8)
A 		26.8
(-3)
A 		43.1
(-1)
A 		75.7
(3)
A 		49
C 52.2
(1.4)
A 		67
(3)
A 		10.5
(-3)
A 		54.9
(1.7)
A 		57
avr 48.8
(1) 		41.7
(-0.1) 		21.3
(-3) 		63
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 44.6
(-2)
A 		39
(-2.4)
A 		112.5
(3)
A 		53.6
(-1.3)
A 		30.7
(-3)
A 		42.5
(-2.1)
A 		82
B 85.6
(-0.1)
A 		104.2
(1.8)
P 		92.8
(0.6)
A 		58.2
(-2.9)
A 		57
(-3)
A 		116.3
(3)
P 		59
C 64.4
(1.2)
A 		27.8
(-1.3)
A 		64
(1.2)
A 		4
(-3)
A 		39.9
(-0.5)
A 		89.3
(3)
P 		85
avr 64.9
(0.1) 		57
(-0.8) 		89.8
(3) 		38.6
(-3) 		42.5
(-2.5) 		82.7
(2.2) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 21.1
(3)
A 		6.8
(-1.7)
A 		2.7
(-3)
A 		8.5
(-1.1)
A 		18
B 11.6
(0.2)
A 		6.6
(-3)
A 		10
(-0.9)
A 		16.1
(3)
A 		10
C 17.3
(2.2)
A 		19.3
(3)
A 		3.7
(-3)
A 		9.3
(-0.8)
A 		16
avr 16.7
(3) 		10.9
(-0.1) 		5.5
(-3) 		11.3
(0.1) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 8.2
(-3)
A 		13.9
(-0.9)
A 		24.5
(3)
A 		13.6
(-1)
A 		9.3
(-2.6)
A 		10.4
(-2.2)
A 		16
B 29.8
(0.1)
A 		34.7
(1.1)
P 		22.5
(-1.5)
A 		15.4
(-3)
A 		23.2
(-1.3)
A 		43.4
(3)
P 		28
C 23.9
(1.8)
A 		8.5
(-1.4)
A 		16.3
(0.2)
A 		0.8
(-3)
A 		12.9
(-0.5)
A 		29.9
(3)
P 		29
avr 20.6
(0.6) 		19
(0) 		21.1
(0.7) 		9.9
(-3) 		15.1
(-1.3) 		27.9
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179975_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18016
Sequence Type Exemplar sequence
Representative Public ID F59D12.5 NCBI
Target Description F59D12.5 /REP_DB=WormBase Gene ID /WP=CE19909 /TR=Q9XTE3 /GB=CAA19427.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078177(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078177 NCBI Caenorhabditis elegans F59D12.5 (F59D12.5) mRNA, complete cds. 11/11 None
SNAP00000026818 ENSEMBL cdna:SNAP chromosome:CEL140:X:15646545:15647275:-1 10/11 None
GENEFINDER00000026821 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15646591:15647275:-1 9/11 None
F59D12.5 ENSEMBL cdna:known chromosome:CEL140:X:15646489:15647275:-1 gene:F59D12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15646488-15647275(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59D12.5
Entrez Gene 186619 Entrez gene
SwissProt Q9XTE3 EMBL-EBI
WormBase CE19909 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04543 Hypothetical protein F59D12.5 [Caenorhabditis elegans] emb|CAA19427.1| Hypothetical protein F59D12.5 [Caenorhabditis elegans] ref|NP_510578.1| F59D12.5 [Caenorhabditis elegans] 2.0E-76
blast CAB04543 Hypothetical protein F59D12.5 [Caenorhabditis elegans] emb|CAA19427.1| Hypothetical protein F59D12.5 [Caenorhabditis elegans] ref|NP_510578.1| F59D12.5 [Caenorhabditis elegans] 2.0E-66
blast CAB04543 Hypothetical protein F59D12.5 [Caenorhabditis elegans] emb|CAA19427.1| Hypothetical protein F59D12.5 [Caenorhabditis elegans] ref|NP_510578.1| F59D12.5 [Caenorhabditis elegans] 3.0E-65
blast CAE63347 Hypothetical protein CBG07749 [Caenorhabditis briggsae] 2.0E-21
blast CAE63347 Hypothetical protein CBG07749 [Caenorhabditis briggsae] 4.0E-21
blast CAE63343 Hypothetical protein CBG07745 [Caenorhabditis briggsae] 3.0E-13
Sequence
Target Sequence 
>C. ELEGANS:179975_AT
gtctgctgtcctgtatacttgtgcagaaatgggcataatccatcgtctcggccgacaatt
tcctgctcctcatcatttggtcttcatcgaagaaataatgtctcacaaaaacacaagcct
tgcactcgaaaaaaatccattagaaaccacggattttgaggaaaatggattaaaatcatt
ggtcaatcttcaagagtttttccgaagactgcacaacgtcattgagcgaggatcctttat
gtcagctgctattcggatggatgttcaggtctcaactcgtgttctcgacactgctccaaa
agtcacttacaacatgtcattaagcacacaaaactgggacaaaaagctggaagtggctcc
ggcggtggtgaacaaacttctcgatgatttacagaaggcgaagcttgcattccgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTGCTGTCCTGTATACTTGTGCA 468 471 18 Antisense
AATGGGCATAATCCATCGTCTCGGC 252 163 45 Antisense
TCCTCATCATTTGGTCTTCATCGAA 160 593 84 Antisense
GAGTTTTTCCGAAGACTGCACAACG 661 397 211 Antisense
CAACGTCATTGAGCGAGGATCCTTT 263 187 231 Antisense
GATCCTTTATGTCAGCTGCTATTCG 103 417 248 Antisense
GATGGATGTTCAGGTCTCAACTCGT 509 407 273 Antisense
TGTTCTCGACACTGCTCCAAAAGTC 657 561 297 Antisense
AAAAAGCTGGAAGTGGCTCCGGCGG 677 129 358 Antisense
GCTCCGGCGGTGGTGAACAAACTTC 352 299 373 Antisense
CAGAAGGCGAAGCTTGCATTCCGTC 255 205 409 Antisense
Sequence Source Affymetrix Proprietary Database