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[179974_at]

Description K06A5.1 /REP_DB=WormBase Gene ID /WP=CE11768 /TR=O44553 /GB=AAK21431.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 97      4grp_highest_8_8 > 27      4grp_high_8_8 > 63      6grp_highest_nonorm > 93      6grp_total > 97      4grp_total > 40      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 191.8
(-1.1)
P 		145.6
(-3)
P 		295.4
(3)
P 		268.1
(1.9)
P 		150
B 187.2
(3)
P 		185.4
(2.7)
P 		184.6
(2.5)
P 		153.1
(-3)
P 		34
C 229.2
(-0.1)
P 		184.4
(-3)
P 		278.4
(3)
P 		184.2
(-3)
P 		94
avr 202.7
(-0.7) 		171.8
(-3) 		252.8
(3) 		201.8
(-0.8) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 805
1 2 3 4 5 6 range
A 206.1
(-2.9)
P 		233.1
(-2.7)
P 		190.5
(-3)
P 		401.3
(-1.3)
P 		652.1
(0.8)
P 		927.7
(3)
P 		737
B 193.1
(-3)
P 		276.1
(-2.3)
P 		302.1
(-2.1)
P 		405.1
(-1.2)
P 		668.2
(1)
P 		911.7
(3)
P 		719
C 157.5
(-3)
P 		321.1
(-1.8)
P 		356.1
(-1.5)
P 		371
(-1.4)
P 		498.4
(-0.5)
P 		962.7
(3)
P 		805
avr 185.6
(-3) 		276.8
(-2.3) 		282.9
(-2.2) 		392.5
(-1.3) 		606.2
(0.4) 		934
(3) 		748
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 69.8
(2)
P 		31.6
(-3)
P 		77.2
(3)
P 		39.2
(-2)
P 		46
B 59.7
(3)
P 		45.8
(-0.1)
P 		42.8
(-0.7)
P 		32.6
(-3)
P 		27
C 75.9
(1.1)
P 		53
(-1)
P 		97
(3)
P 		31.1
(-3)
P 		66
avr 68.5
(2.4) 		43.5
(-1.5) 		72.3
(3) 		34.3
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 302
1 2 3 4 5 6 range
A 38
(-3)
P 		82.9
(-1.6)
P 		41.5
(-2.9)
P 		101.8
(-1)
P 		196.8
(2.1)
P 		225.9
(3)
P 		188
B 67.2
(-3)
P 		91.9
(-2.5)
P 		73.3
(-2.9)
P 		107.3
(-2.1)
P 		271.5
(1.5)
P 		340
(3)
P 		273
C 58.4
(-3)
P 		98
(-2.1)
P 		90.6
(-2.3)
P 		74.6
(-2.6)
P 		161.3
(-0.7)
P 		322.3
(3)
P 		264
avr 54.5
(-3) 		90.9
(-2.1) 		68.5
(-2.7) 		94.6
(-2) 		209.9
(0.9) 		296.1
(3) 		242
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179974_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1189
Sequence Type Exemplar sequence
Representative Public ID K06A5.1 NCBI
Target Description K06A5.1 /REP_DB=WormBase Gene ID /WP=CE11768 /TR=O44553 /GB=AAK21431.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059462(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059462 NCBI Caenorhabditis elegans K06A5.1 (K06A5.1) mRNA, complete cds. 11/11 None
SNAP00000044601 ENSEMBL cdna:SNAP chromosome:CEL140:I:6481356:6484806:1 11/11 None
GENEFINDER00000044610 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6481356:6484806:1 11/11 None
K06A5.1 ENSEMBL cdna:known chromosome:CEL140:I:6482194:6484862:1 gene:K06A5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6482000-6484735(+) 96.68 100.0
Public Domain and Genome References
Gene Title
Ensembl K06A5.1
Entrez Gene 172354 Entrez gene
SwissProt O44553 EMBL-EBI
WormBase CE36655 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21431 Hypothetical protein K06A5.1 [Caenorhabditis elegans] ref|NP_491863.2| K06A5.1 [Caenorhabditis elegans] 0.0
blast AAF40006 Hypothetical protein ZK973.2 [Caenorhabditis elegans] ref|NP_491360.1| ZK973.2 [Caenorhabditis elegans] 8.0E-43
blast AAF40006 Hypothetical protein ZK973.2 [Caenorhabditis elegans] ref|NP_491360.1| ZK973.2 [Caenorhabditis elegans] 2.0E-42
blast CAE67201 Hypothetical protein CBG12637 [Caenorhabditis briggsae] 1.0E-36
blast CAE67201 Hypothetical protein CBG12637 [Caenorhabditis briggsae] 2.0E-36
Sequence
Target Sequence 
>C. ELEGANS:179974_AT
acgcccacaatccaacaacgaagacgagaaaaagaagaatcagaaagtaccaactagagt
ccgttctaaatcagtcagctacgaaatcagtaaactggtaccaaaccggcatgtttcacg
agtaccgcctgatttttacgagatgcaaattctgtggactcagatttcggaaaagacaac
tcctactgaactttcagagtacaaatcgggccttcaaaaattgttgactggacgggtgtc
ttgtttgaaaccaatctttcaattgcttccaactcttccaattgaattatacgaaacgca
cgagaagttgtacagcctcttctgtgagattactggagcattcccattcaaatatcatca
aggttctaatctcatctcaagacactcaatcgcggacaaatctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGCCCACAATCCAACAACGAAGAC 165 91 1443 Antisense
GAGTCCGTTCTAAATCAGTCAGCTA 155 401 1499 Antisense
ACCGGCATGTTTCACGAGTACCGCC 556 87 1547 Antisense
GAGTACCGCCTGATTTTTACGAGAT 333 399 1562 Antisense
AAGACAACTCCTACTGAACTTTCAG 459 153 1615 Antisense
TTCAGAGTACAAATCGGGCCTTCAA 470 683 1635 Antisense
ATCTTTCAATTGCTTCCAACTCTTC 21 33 1696 Antisense
GAAGTTGTACAGCCTCTTCTGTGAG 600 337 1746 Antisense
GGAGCATTCCCATTCAAATATCATC 650 519 1777 Antisense
ATCAAGGTTCTAATCTCATCTCAAG 317 27 1799 Antisense
GACACTCAATCGCGGACAAATCTCA 150 367 1823 Antisense
Sequence Source Affymetrix Proprietary Database