[Home] | [Total List]

[179973_s_at]

Description C07G1.5 /REP_DB=WormBase Gene ID /WP=CE06781 /TR=Q17796 /GB=AAB00658.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 74      6grp_total > 75      4grp_total > 63      6grp_highest_sub > 04_05_06      6grp_cgc > 77      6grp_high1_sub > In      6grp_cgc_sub > 04_05_06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 684.7
(3)
P 		558.4
(-3)
P 		616.1
(-0.3)
P 		578.5
(-2)
P 		126
B 624.6
(3)
P 		503.3
(-2.6)
P 		586.3
(1.2)
P 		495
(-3)
P 		130
C 677
(2.7)
P 		506.2
(-2.4)
P 		687.1
(3)
P 		484.7
(-3)
P 		202
avr 662.1
(3) 		522.6
(-2.9) 		629.8
(1.6) 		519.4
(-3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 492
1 2 3 4 5 6 range
A 653.1
(-1.2)
P 		794.7
(0.7)
P 		521.8
(-3)
P 		915.2
(2.3)
P 		732.6
(-0.1)
P 		963.8
(3)
P 		442
B 608.5
(-0.3)
P 		471.6
(-3)
P 		661.5
(0.7)
P 		780.3
(3)
P 		617.7
(-0.2)
P 		685.1
(1.1)
P 		309
C 701.6
(0.6)
P 		527.2
(-3)
P 		753.5
(1.6)
P 		820
(3)
P 		607.8
(-1.3)
P 		750.5
(1.6)
P 		293
avr 654.4
(-1.6) 		597.8
(-3) 		645.6
(-1.8) 		838.5
(3) 		652.7
(-1.6) 		799.8
(2) 		241
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 249.3
(3)
P 		121.2
(-1.7)
P 		161.1
(-0.2)
P 		84.7
(-3)
P 		165
B 199.2
(3)
P 		124.3
(-1.8)
P 		135.9
(-1.1)
P 		105.5
(-3)
P 		94
C 224.1
(2.4)
P 		145.5
(-0.6)
P 		239.5
(3)
P 		81.7
(-3)
P 		158
avr 224.2
(3) 		130.3
(-1.2) 		178.8
(1) 		90.6
(-3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 120.4
(-2.8)
P 		282.6
(3)
P 		113.6
(-3)
P 		232.1
(1.2)
P 		221.1
(0.8)
P 		234.7
(1.3)
P 		169
B 211.7
(0.3)
P 		157
(-3)
P 		160.6
(-2.8)
P 		206.7
(0)
P 		251
(2.7)
P 		255.5
(3)
P 		99
C 260
(3)
P 		160.9
(-3)
P 		191.8
(-1.1)
P 		164.9
(-2.8)
P 		196.7
(-0.8)
P 		251.2
(2.5)
P 		99
avr 197.4
(-0.2) 		200.2
(-0.1) 		155.3
(-3) 		201.2
(-0) 		222.9
(1.4) 		247.1
(3) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179973_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9139
Sequence Type Exemplar sequence
Representative Public ID C07G1.5 NCBI
Target Description C07G1.5 /REP_DB=WormBase Gene ID /WP=CE06781 /TR=Q17796 /GB=AAB00658.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068974(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068974 NCBI Caenorhabditis elegans Hepatocyte Growth factor-Regulated TK Substrate (HRS) family member (hgrs-1) (hgrs-1) mRNA, complete cds. 11/11 None
SNAP00000020463 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8201704:8205037:-1 11/11 None
GENEFINDER00000020480 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8200671:8205037:-1 11/11 None
C07G1.5 ENSEMBL cdna:known chromosome:CEL140:IV:8201380:8205046:-1 gene:C07G1.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8201709-8205226(-) 94.13 100.0
Public Domain and Genome References
Gene Title
Gene Symbol hgrs-1
Ensembl C07G1.5
Entrez Gene 177617 Entrez gene
SwissProt Q17796 EMBL-EBI
WormBase CE32574 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.9656.1.S1_S_AT hepatocyte growth factor-regulated tyrosine kinase substrate cfa
DROSOPHILA_2:1630393_A_AT Hepatocyte growth factor regulated tyrosine kinase substrate dm
DROSGENOME1:154536_AT Hepatocyte growth factor regulated tyrosine kinase substrate dm
CHICKEN:GGA.10347.1.S1_AT hepatocyte growth factor-regulated tyrosine kinase substrate gga
CHICKEN:GGA.7570.1.S1_AT hepatocyte growth factor-regulated tyrosine kinase substrate gga
CHICKEN:GGAAFFX.22174.1.S1_AT hepatocyte growth factor-regulated tyrosine kinase substrate gga
HG-U133_PLUS_2:210428_S_AT hepatocyte growth factor-regulated tyrosine kinase substrate hs
HG-U133A:210428_S_AT hepatocyte growth factor-regulated tyrosine kinase substrate hs
HG-FOCUS:210428_S_AT hepatocyte growth factor-regulated tyrosine kinase substrate hs
HG-U133A_2:210428_S_AT hepatocyte growth factor-regulated tyrosine kinase substrate hs
HU35KSUBA:RC_AA158251_AT hepatocyte growth factor-regulated tyrosine kinase substrate hs
U133_X3P:G9022388_3P_X_AT hepatocyte growth factor-regulated tyrosine kinase substrate hs
U133_X3P:G9022388_3P_A_AT hepatocyte growth factor-regulated tyrosine kinase substrate hs
U133_X3P:210428_3P_S_AT hepatocyte growth factor-regulated tyrosine kinase substrate hs
HG-U95AV2:33887_AT hepatocyte growth factor-regulated tyrosine kinase substrate hs
HG-U133_PLUS_2:232460_AT Hepatocyte growth factor-regulated tyrosine kinase substrate hs
HG-U133B:232460_AT Hepatocyte growth factor-regulated tyrosine kinase substrate hs
HG-U133_PLUS_2:232627_AT Hepatocyte growth factor-regulated tyrosine kinase substrate hs
HG-U133B:232627_AT Hepatocyte growth factor-regulated tyrosine kinase substrate hs
U133_X3P:HS.24756.2.S1_3P_AT Hepatocyte growth factor-regulated tyrosine kinase substrate hs
U133_X3P:HS.193211.0.S1_3P_X_AT Hepatocyte growth factor-regulated tyrosine kinase substrate hs
U133_X3P:HS.193211.0.S1_3P_AT Hepatocyte growth factor-regulated tyrosine kinase substrate hs
U133_X3P:232627_3P_AT Hepatocyte growth factor-regulated tyrosine kinase substrate hs
HG-U95D:72787_AT Hepatocyte growth factor-regulated tyrosine kinase substrate hs
HG-U95E:79492_AT Hepatocyte growth factor-regulated tyrosine kinase substrate hs
MOE430A:1416540_AT HGF-regulated tyrosine kinase substrate mm
MOUSE430A_2:1416540_AT HGF-regulated tyrosine kinase substrate mm
MOUSE430_2:1416540_AT HGF-regulated tyrosine kinase substrate mm
MU11KSUBB:MSA.1757.0_S_AT HGF-regulated tyrosine kinase substrate mm
MG-U74AV2:101448_AT HGF-regulated tyrosine kinase substrate mm
MU19KSUBA:TC20393_AT HGF-regulated tyrosine kinase substrate, mRNA (cDNA clone MGC:5999 IMAGE:3497966) mm
RAE230A:1374996_AT HGF-regulated tyrosine kinase substrate rn
RAT230_2:1374996_AT HGF-regulated tyrosine kinase substrate rn
RAE230B:1393244_AT HGF-regulated tyrosine kinase substrate rn
RAT230_2:1393244_AT HGF-regulated tyrosine kinase substrate rn
RG-U34B:RC_AI045056_AT HGF-regulated tyrosine kinase substrate rn
RG-U34C:RC_AI138093_AT HGF-regulated tyrosine kinase substrate rn
RG-U34C:RC_AI172269_AT HGF-regulated tyrosine kinase substrate rn
YEAST_2:1776083_AT Endosomal protein that forms a complex with Hse1p; required for recycling Golgi proteins, forming lumenal membranes and sorting ubiquitinated proteins destined for degradation; has Ubiquitin Interaction Motifs which bind ubiquitin (Ubi4p) Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00658 Hepatocyte growth factor-regulated tk substrate (hrs) family protein 1 [Caenorhabditis elegans] ref|NP_501375.2| Hepatocyte Growth factor-Regulated TK Substrate (HRS) family member (hgrs-1) [Caenorhabditis elegans] 0.0
blast CAE58432 Hypothetical protein CBG01567 [Caenorhabditis briggsae] 0.0
blast AAH45274 MGC68804 protein [Xenopus laevis] 1.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR002014 EMBL-EBI VHS 5.0E-70
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 1.7E-4
Pfam IPR000306 EMBL-EBI Zn-finger, FYVE type 3.6E-30
Pfam IPR002109 EMBL-EBI Glutaredoxin 5.8E-12
Sequence
Target Sequence 
>C. ELEGANS:179973_S_AT
gcgagcaagctcttcaaagattccaacagcaacaacaagaaatggcaatgcgtcgacatc
agcaacaagcttactacaatccacaacaaatgggttatggagcacctcctccttcaggac
ctcaacagcctccacaacaatcatattatggataccaacaaggaccacaatcacaggctc
ctcctccatcgagtcaatatcagcagtcacatgcttcgacgcagcaacaacaacaacaat
actatcaacattatcaggcaaatcagaccgttactcaaccagtacaacaagctcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAGCAAGCTCTTCAAAGATTCCA 52 291 1694 Antisense
GGCAATGCGTCGACATCAGCAACAA 306 533 1737 Antisense
AACAAGCTTACTACAATCCACAACA 338 135 1757 Antisense
AATGGGTTATGGAGCACCTCCTCCT 588 161 1782 Antisense
ACAGCCTCCACAACAATCATATTAT 439 109 1818 Antisense
ACAAGGACCACAATCACAGGCTCCT 520 113 1851 Antisense
TCCTCCTCCATCGAGTCAATATCAG 42 593 1872 Antisense
ATCAGCAGTCACATGCTTCGACGCA 86 29 1892 Antisense
GTCACATGCTTCGACGCAGCAACAA 339 465 1899 Antisense
GGCAAATCAGACCGTTACTCAACCA 47 533 1950 Antisense
ACTCAACCAGTACAACAAGCTCAAC 453 99 1966 Antisense
Sequence Source Affymetrix Proprietary Database