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[179972_at]

Description Y26D4A.3 /REP_DB=WormBase Gene ID /WP=CE21484 /TR=Q9U2Q2 /GB=CAB54342.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 29.2
(-0.9)
A 		64
(3)
A 		10.9
(-3)
A 		25.9
(-1.3)
A 		53
B 7
(-3)
A 		11.6
(-2.2)
A 		42.5
(3)
A 		34.8
(1.7)
A 		36
C 26.3
(1.1)
A 		36.6
(3)
A 		4.5
(-3)
A 		8.6
(-2.2)
A 		32
avr 20.8
(-2.5) 		37.4
(3) 		19.3
(-3) 		23.1
(-1.7) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 9.1
(-2.3)
A 		5.4
(-2.9)
A 		32.7
(1.7)
A 		5.1
(-3)
A 		40.2
(3)
A 		7.6
(-2.6)
A 		35
B 9.7
(-2.3)
A 		57
(3)
A 		9.5
(-2.4)
A 		7.8
(-2.5)
A 		53.7
(2.6)
A 		3.8
(-3)
A 		53
C 18.8
(-1.4)
A 		31
(-0.1)
A 		61.4
(3)
A 		5.5
(-2.7)
A 		33.4
(0.1)
A 		2.8
(-3)
A 		59
avr 12.5
(-1.8) 		31.1
(1.2) 		34.5
(1.7) 		6.1
(-2.8) 		42.4
(3) 		4.7
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 10.6
(1.2)
A 		13.9
(3)
A 		2.9
(-3)
A 		3.8
(-2.5)
A 		11
B 2.2
(-3)
A 		2.9
(-2.5)
A 		9.9
(3)
A 		7.4
(1.1)
A 		8
C 8.7
(1.8)
A 		10.5
(3)
A 		1.6
(-2.9)
A 		1.5
(-3)
A 		9
avr 7.2
(0.7) 		9.1
(3) 		4.8
(-2.3) 		4.2
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.7
(-2.8)
A 		1.9
(-2.7)
A 		7.1
(0.2)
A 		1.3
(-3)
A 		12.1
(3)
A 		1.9
(-2.7)
A 		11
B 3.4
(-2.4)
A 		19
(2.2)
A 		2.3
(-2.7)
A 		2.1
(-2.8)
A 		21.8
(3)
A 		1.4
(-3)
A 		20
C 7
(-0.5)
A 		9.5
(0.5)
A 		15.6
(3)
A 		1.1
(-2.9)
A 		10.8
(1)
A 		0.9
(-3)
A 		15
avr 4
(-1.8) 		10.1
(0.9) 		8.3
(0.1) 		1.5
(-3) 		14.9
(3) 		1.4
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179972_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1640
Sequence Type Exemplar sequence
Representative Public ID Y26D4A.3 NCBI
Target Description Y26D4A.3 /REP_DB=WormBase Gene ID /WP=CE21484 /TR=Q9U2Q2 /GB=CAB54342.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060886(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060886 NCBI Caenorhabditis elegans Y26D4A.3 (Y26D4A.3) mRNA, complete cds. 11/11 None
GENEFINDER00000013611 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13080187:13082898:-1 11/11 None
SNAP00000013480 ENSEMBL cdna:SNAP chromosome:CEL140:I:13080841:13082898:-1 9/11 None
Y26D4A.3 ENSEMBL cdna:known chromosome:CEL140:I:13080187:13082898:-1 gene:Y26D4A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13080117-13082829(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y26D4A.3
Entrez Gene 189544 Entrez gene
SwissProt Q9U2Q2 EMBL-EBI
WormBase CE21484 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54342 Hypothetical protein Y26D4A.3 [Caenorhabditis elegans] ref|NP_493287.1| Y26D4A.3 [Caenorhabditis elegans] 0.0
blast CAB54342 Hypothetical protein Y26D4A.3 [Caenorhabditis elegans] ref|NP_493287.1| Y26D4A.3 [Caenorhabditis elegans] 1.0E-177
blast CAB54341 Hypothetical protein Y26D4A.4 [Caenorhabditis elegans] ref|NP_493286.1| Y26D4A.4 [Caenorhabditis elegans] 1.0E-72
blast CAB54341 Hypothetical protein Y26D4A.4 [Caenorhabditis elegans] ref|NP_493286.1| Y26D4A.4 [Caenorhabditis elegans] 2.0E-72
blast CAE63463 Hypothetical protein CBG07930 [Caenorhabditis briggsae] 6.0E-33
blast CAE63463 Hypothetical protein CBG07930 [Caenorhabditis briggsae] 8.0E-33
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493287.1 1 312-334
Y26D4A.3 1 312-334
GENEFINDER00000013611 1 312-334
Sequence
Target Sequence 
>C. ELEGANS:179972_AT
gttgcgatgacatggggacctggagagccaaaagaagcgcctgaaaacaattgtgcctat
ttgcggaaaaatgattcaatgaaggaatttcctaattacgccctctttgctgcaccatgc
aactccaacgatgttgatggtttttcaatcgggtctctacctcaatcggcgcggggaatt
ccaacgtggactcatacttctcaaaatatgacttcccagccagcaaaacccaatattcaa
accgcaattgatttttctgatattccaccatcatataatgaattgtacccgcaagtaaat
actgaaccaccggtatccccaacgaccacaccaagaactgaaactttatctgtaactgaa
agtgccgtcactttctcgaatcaagagtgtcaacaaaggaatcaagtagttatttccaga
cgtgctcgaagaattaacaactgtcgaaaccgttctatttcgtgtatcgaatggtcttgt
ttttcggtaataggtttagtcatttttattgtggtttttttatctgttagaaggttacca
tttaatcttacggacaagctttacaacacctattcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCGATGACATGGGGACCTGGAG 253 437 487 Antisense
GAAGCGCCTGAAAACAATTGTGCCT 81 345 520 Antisense
GCACCATGCAACTCCAACGATGTTG 311 313 598 Antisense
TTTTTCAATCGGGTCTCTACCTCAA 568 673 627 Antisense
TCCAACGTGGACTCATACTTCTCAA 560 587 666 Antisense
TCAAAATATGACTTCCCAGCCAGCA 198 629 687 Antisense
CCAGCCAGCAAAACCCAATATTCAA 419 273 702 Antisense
CCAACGACCACACCAAGAACTGAAA 224 277 805 Antisense
TGCCGTCACTTTCTCGAATCAAGAG 503 585 849 Antisense
AGTAGTTATTTCCAGACGTGCTCGA 441 61 891 Antisense
GACAAGCTTTACAACACCTATTCAC 294 365 1039 Antisense
Sequence Source Affymetrix Proprietary Database