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[179969_at]

Description C08E3.2 /REP_DB=WormBase Gene ID /WP=CE08005 /TR=O17197 /GB=AAB70962.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 21.7
(1.1)
A 		5.7
(-3)
A 		29.3
(3)
A 		17.7
(0.1)
A 		24
B 6.6
(-2.3)
A 		41.8
(3)
A 		26.8
(0.7)
A 		2.2
(-3)
A 		40
C 4.2
(-3)
A 		46.8
(3)
A 		18.4
(-1)
A 		41.1
(2.2)
A 		43
avr 10.8
(-3) 		31.4
(3) 		24.8
(1.1) 		20.3
(-0.2) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 27.5
(2.8)
A 		16.9
(0.4)
A 		27.2
(2.7)
A 		28.5
(3)
A 		5.3
(-2.3)
A 		2.1
(-3)
A 		26
B 20.8
(-0.6)
A 		22
(-0.5)
A 		1.3
(-3)
A 		50.4
(3)
A 		16.7
(-1.1)
A 		16.2
(-1.2)
A 		49
C 3.4
(-3)
A 		14.5
(0.1)
A 		24.8
(3)
A 		10.5
(-1)
A 		4.5
(-2.7)
A 		9.2
(-1.4)
A 		21
avr 17.2
(-0.6) 		17.8
(-0.4) 		17.8
(-0.4) 		29.8
(3) 		8.8
(-3) 		9.2
(-2.9) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 7.9
(3)
A 		1.2
(-3)
A 		7.7
(2.8)
A 		2.6
(-1.7)
A 		7
B 2.1
(-2)
A 		10.3
(3)
A 		6.2
(0.5)
A 		0.5
(-3)
A 		10
C 1.4
(-3)
A 		13.5
(3)
A 		6.4
(-0.5)
A 		6.9
(-0.3)
A 		12
avr 3.8
(-2.4) 		8.3
(3) 		6.8
(1.2) 		3.3
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5.1
(1.1)
A 		6
(1.9)
A 		5.9
(1.8)
A 		7.2
(3)
A 		1.6
(-2)
A 		0.5
(-3)
A 		7
B 7.2
(0.2)
A 		7.3
(0.2)
A 		0.3
(-3)
A 		13.3
(3)
A 		6.8
(0)
A 		6
(-0.4)
A 		13
C 1.3
(-3)
A 		4.4
(0.7)
A 		6.3
(3)
A 		2.1
(-2)
A 		1.4
(-2.9)
A 		3.1
(-0.8)
A 		5
avr 4.5
(-1.2) 		5.9
(0.8) 		4.2
(-1.6) 		7.5
(3) 		3.3
(-2.9) 		3.2
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179969_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4678
Sequence Type Exemplar sequence
Representative Public ID C08E3.2 NCBI
Target Description C08E3.2 /REP_DB=WormBase Gene ID /WP=CE08005 /TR=O17197 /GB=AAB70962.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061610(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061610 NCBI Caenorhabditis elegans C08E3.2 (C08E3.2) mRNA, complete cds. 11/11 None
C08E3.2 ENSEMBL cdna:known chromosome:CEL140:II:1611335:1612514:1 gene:C08E3.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042047 8/11 Cross Hyb Matching Probes None
GENEFINDER00000042064 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1611333-1612513(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08E3.2
Entrez Gene 182396 Entrez gene
SwissProt O17197 EMBL-EBI
WormBase CE08005 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB70962 Hypothetical protein C08E3.2 [Caenorhabditis elegans] ref|NP_494011.1| C08E3.2 [Caenorhabditis elegans] 1.0E-131
blast AAN65319 Hypothetical protein F39E9.2 [Caenorhabditis elegans] ref|NP_494499.2| F39E9.2 [Caenorhabditis elegans] 2.0E-45
blast H88094 protein F39E9.2 [imported] - Caenorhabditis elegans 6.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.3E-31
Sequence
Target Sequence 
>C. ELEGANS:179969_AT
aatgttgccgggatacgatgcgccttctattactctccaagcgacaaaaatcagagacga
tgggttttcaattgggaagaacttggaaaagaaggaatcatcaacctaccctcggataaa
aatgatgcaattttgctggttgaagagcagcagttgcatgtcaataaagcttttctctcc
ttccactccgactacttttctgcacttttctcatcaaatttcaaagatggcgaattggat
gagattccactcaaagacgtcactattgaggagtttggtcttgttctgagcacaattcat
ccggaaactgttcttccggtgaatgataaaacagtggagaagcttctggagctcgccgat
cgctttataattccggctgtgttgagattggccgaaacccacctgctgacccattctaaa
attggaaacgacgcgatgctatggatggcagacaagtatcgacttctgaagcttctcgat
gtatgcattctccgtattgatacagtggagaaggctaagaagcttcaactctcaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTTGCCGGGATACGATGCGCCT 69 163 118 Antisense
CTTCTATTACTCTCCAAGCGACAAA 418 217 141 Antisense
AGAAGGAATCATCAACCTACCCTCG 489 73 207 Antisense
TCAATAAAGCTTTTCTCTCCTTCCA 672 633 278 Antisense
GAGATTCCACTCAAAGACGTCACTA 446 397 358 Antisense
AGGAGTTTGGTCTTGTTCTGAGCAC 76 57 386 Antisense
GATCGCTTTATAATTCCGGCTGTGT 429 417 475 Antisense
GTGTTGAGATTGGCCGAAACCCACC 484 485 496 Antisense
CACCTGCTGACCCATTCTAAAATTG 589 201 517 Antisense
GAAGCTTCTCGATGTATGCATTCTC 187 343 585 Antisense
GCTAAGAAGCTTCAACTCTCACCAC 476 301 631 Antisense
Sequence Source Affymetrix Proprietary Database