[Home] | [Total List]

[179968_at]

Description W10C8.4 /REP_DB=WormBase Gene ID /WP=CE18352 /TR=O45010 /GB=AAK21502.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 20      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 71      6grp_total > 23      4grp_total > 12      6grp_highest_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 870
1 2 3 4 range
A 673.4
(0)
P 		377.2
(-3)
P 		388.3
(-2.9)
P 		966.8
(3)
P 		590
B 632.6
(-0.9)
P 		488.7
(-2.2)
P 		401.1
(-3)
P 		1055.1
(3)
P 		654
C 670.8
(-1)
P 		546.6
(-1.8)
P 		380
(-3)
P 		1246.8
(3)
P 		867
avr 658.9
(-0.7) 		470.8
(-2.3) 		389.8
(-3) 		1089.6
(3) 		700

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 248
1 2 3 4 5 6 range
A 324.6
(-0.7)
P 		422.1
(1.8)
P 		360.2
(0.2)
P 		469.2
(3)
P 		235
(-3)
P 		280.2
(-1.8)
P 		234
B 398.6
(3)
P 		355.1
(1)
P 		310.7
(-1)
P 		295.1
(-1.7)
P 		267.7
(-3)
P 		324.9
(-0.4)
P 		131
C 442.9
(2.4)
P 		398.8
(1.4)
P 		466.1
(3)
P 		357
(0.3)
P 		239.3
(-2.6)
P 		221.2
(-3)
P 		245
avr 388.7
(2.9) 		392
(3) 		379
(2.5) 		373.8
(2.2) 		247.3
(-3) 		275.4
(-1.8) 		145
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 245.2
(3)
P 		81.9
(-3)
P 		101.5
(-2.3)
P 		141.5
(-0.8)
P 		163
B 201.7
(1.9)
P 		120.7
(-1.7)
P 		92.9
(-3)
P 		224.8
(3)
P 		132
C 222
(3)
P 		157.1
(-1.3)
P 		132.4
(-3)
P 		210.2
(2.2)
P 		90
avr 223
(3) 		119.9
(-2.4) 		108.9
(-3) 		192.2
(1.4) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 59.8
(-3)
P 		150.1
(3)
P 		78.5
(-1.8)
P 		119
(0.9)
P 		70.9
(-2.3)
P 		68.2
(-2.4)
P 		90
B 138.7
(3)
P 		118.2
(1.1)
P 		75.4
(-3)
P 		78.2
(-2.7)
P 		108.8
(0.2)
P 		121.2
(1.3)
P 		63
C 164.2
(3)
P 		121.7
(0.2)
P 		118.6
(0)
P 		71.8
(-3)
P 		77.4
(-2.6)
P 		74.1
(-2.9)
P 		92
avr 120.9
(1.8) 		130
(3) 		90.8
(-2.3) 		89.7
(-2.5) 		85.7
(-3) 		87.8
(-2.7) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179968_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.330
Sequence Type Exemplar sequence
Representative Public ID W10C8.4 NCBI
Target Description W10C8.4 /REP_DB=WormBase Gene ID /WP=CE18352 /TR=O45010 /GB=AAK21502.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058655(11), NM_182056(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058655 NCBI Caenorhabditis elegans W10C8.4a (W10C8.4) mRNA, complete cds. 11/11 None
NM_182056 NCBI Caenorhabditis elegans W10C8.4b (W10C8.4) mRNA, complete cds. 9/11 None
SNAP00000012335 ENSEMBL cdna:SNAP chromosome:CEL140:I:2852031:2853797:-1 11/11 None
GENEFINDER00000012341 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2852031:2853797:-1 11/11 None
W10C8.4a ENSEMBL cdna:known chromosome:CEL140:I:2851998:2853856:-1 gene:W10C8.4 11/11 None
W10C8.4b ENSEMBL cdna:known chromosome:CEL140:I:2851999:2852750:-1 gene:W10C8.4 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2852030-2853228(-) 100.0 100.0
Public Domain and Genome References
Ensembl W10C8.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491056 W10C8.4a [Caenorhabditis elegans] gb|AAK21502.2| Hypothetical protein W10C8.4a [Caenorhabditis elegans] 1.0E-120
blast CAE60597 Hypothetical protein CBG04233 [Caenorhabditis briggsae] 1.0E-112
blast NP_871856 W10C8.4b [Caenorhabditis elegans] gb|AAO61419.1| Hypothetical protein W10C8.4b [Caenorhabditis elegans] 1.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.0E-7
Sequence
Target Sequence 
>C. ELEGANS:179968_AT
tatttgcagacatatcgctcttcaatatggtctgtacggaagctcaagtggggatcagga
agaagttgataaagtgattcaaaaactcgaggagctcaacacagcgatgaacccaatttt
gagagcaacactgacgaagaactatgacgcgaggaaagaatgctggaatgtattcaaaga
ggagtcactcttcccattgctcagagaatatgaagagttgctcggcgagcaaaagttcat
gattggagatcgatattcatgggctgacatcgctgtcgtcgagtttctaactcggtgtca
gcagtgctacgatagcttctatctggctcatttcgagaggctccgaactttttgccagac
ttttgagtctcttccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTGCAGACATATCGCTCTTCAA 167 663 54 Antisense
CGCTCTTCAATATGGTCTGTACGGA 373 253 69 Antisense
GGAGCTCAACACAGCGATGAACCCA 28 521 144 Antisense
AAAGAGGAGTCACTCTTCCCATTGC 102 123 229 Antisense
ATATTCATGGGCTGACATCGCTGTC 535 19 306 Antisense
ATCGCTGTCGTCGAGTTTCTAACTC 352 37 322 Antisense
CTAACTCGGTGTCAGCAGTGCTACG 403 227 340 Antisense
GATAGCTTCTATCTGGCTCATTTCG 593 423 364 Antisense
TCTGGCTCATTTCGAGAGGCTCCGA 122 607 375 Antisense
AGGCTCCGAACTTTTTGCCAGACTT 101 53 391 Antisense
TGCCAGACTTTTGAGTCTCTTCCGC 94 585 406 Antisense
Sequence Source Affymetrix Proprietary Database