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[179967_s_at]

Description M01D1.8 /REP_DB=WormBase Gene ID /WP=CE12256 /TR=O17229 /GB=AAB70992.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 22      6grp_total > 68      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 32.8
(-3)
A 		78.4
(0.5)
P 		50.1
(-1.7)
A 		111.5
(3)
P 		79
B 47.7
(-3)
P 		64
(-1.1)
A 		49.2
(-2.8)
A 		98.8
(3)
P 		51
C 56.5
(-3)
A 		58.4
(-2.8)
A 		63.7
(-2.1)
P 		102.1
(3)
P 		46
avr 45.7
(-3) 		66.9
(-0.8) 		54.3
(-2.1) 		104.1
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 92.1
(-0.8)
A 		46.8
(-3)
A 		48.3
(-2.9)
A 		49
(-2.9)
A 		62.2
(-2.3)
P 		171.2
(3)
P 		124
B 78.1
(-0.4)
M 		67.6
(-0.9)
P 		26.8
(-3)
A 		59.3
(-1.3)
A 		63.2
(-1.1)
P 		143.9
(3)
P 		117
C 57.2
(-2.4)
P 		54
(-2.6)
P 		43.5
(-3)
A 		65.3
(-2.1)
A 		61.7
(-2.3)
P 		191.8
(3)
P 		148
avr 75.8
(-1.3) 		56.1
(-2.2) 		39.5
(-3) 		57.9
(-2.1) 		62.4
(-1.9) 		169
(3) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.9
(-3)
A 		17
(3)
P 		13.1
(-1.6)
A 		16.3
(2.2)
P 		5
B 15.2
(-0.6)
P 		15.8
(-0.3)
A 		11.4
(-3)
A 		21.1
(3)
P 		10
C 18.7
(-0.9)
A 		16.8
(-3)
A 		22.2
(3)
P 		17.2
(-2.6)
P 		5
avr 15.3
(-3) 		16.5
(-0.5) 		15.6
(-2.4) 		18.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 17
(-1.8)
A 		16.6
(-1.8)
A 		10.5
(-3)
A 		12.4
(-2.6)
A 		18.8
(-1.4)
P 		41.7
(3)
P 		31
B 27.2
(-0.4)
M 		22.5
(-1)
P 		6.5
(-3)
A 		15.7
(-1.8)
A 		25.7
(-0.6)
P 		53.7
(3)
P 		47
C 21.2
(-1.9)
P 		16.5
(-2.4)
P 		11.1
(-3)
A 		13.1
(-2.8)
A 		20
(-2)
P 		64.2
(3)
P 		53
avr 21.8
(-1.3) 		18.5
(-1.8) 		9.4
(-3) 		13.7
(-2.4) 		21.5
(-1.3) 		53.2
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179967_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4670
Sequence Type Exemplar sequence
Representative Public ID M01D1.8 NCBI
Target Description M01D1.8 /REP_DB=WormBase Gene ID /WP=CE12256 /TR=O17229 /GB=AAB70992.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061495(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061495 NCBI Caenorhabditis elegans M01D1.8 (M01D1.8) mRNA, complete cds. 11/11 None
SNAP00000029288 ENSEMBL cdna:SNAP chromosome:CEL140:II:1041370:1041864:-1 9/11 None
GENEFINDER00000029302 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1041370:1042308:-1 11/11 None
M01D1.8 ENSEMBL cdna:known chromosome:CEL140:II:1041370:1042308:-1 gene:M01D1.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1041368-1042307(-) 97.65 100.0
Public Domain and Genome References
Gene Title
Ensembl M01D1.8
Entrez Gene 173484 Entrez gene
SwissProt O17229 EMBL-EBI
WormBase CE12256 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70992 Hypothetical protein M01D1.8 [Caenorhabditis elegans] ref|NP_493896.1| M01D1.8 [Caenorhabditis elegans] 1.0E-163
blast AAB70992 Hypothetical protein M01D1.8 [Caenorhabditis elegans] ref|NP_493896.1| M01D1.8 [Caenorhabditis elegans] 9.0E-91
blast AAK84545 Hypothetical protein M01D1.10 [Caenorhabditis elegans] ref|NP_493897.1| M01D1.10 [Caenorhabditis elegans] 5.0E-43
blast AAC67475 Hypothetical protein F58E1.14 [Caenorhabditis elegans] ref|NP_494048.1| F58E1.14 [Caenorhabditis elegans] 1.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.7E-6
Sequence
Target Sequence 
>C. ELEGANS:179967_S_AT
gtttaatcactttctctatgtcctgaatgtttcaaaaattgaaggtctagaattttcagc
tgatcccctttccccaatggagcacaccattgaactcattaaaacacttccaccaaccga
atcgctcttcctaggatatgctcgtcaccgttctttgagttcgtcccaacttgttgcact
acgtcaaatttggacacctgaataccaacatgtttttctaccagccgactactctttaaa
tgacctactatgcaccagctgttcatgcatcgatttacgcgattcactgttaacggaaaa
ggatatcaatgtgttcttgaaacatttggcggctggattgttgccagaactacagacgtt
tggttttaattcacataggcctaattacgatcgaagcatgattctgaaaggaataccctt
tgaagatacaccagccgacagaaaattgcgattgccacccggaaacgcttcaaactacgc
agtag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTAATCACTTTCTCTATGTCCTG 551 449 336 Antisense
GTCTAGAATTTTCAGCTGATCCCCT 26 469 380 Antisense
TCATTAAAACACTTCCACCAACCGA 421 617 431 Antisense
GAATCGCTCTTCCTAGGATATGCTC 240 329 454 Antisense
TGAGTTCGTCCCAACTTGTTGCACT 644 565 491 Antisense
CTACCAGCCGACTACTCTTTAAATG 154 225 553 Antisense
TAAATGACCTACTATGCACCAGCTG 427 641 572 Antisense
CACCAGCTGTTCATGCATCGATTTA 124 203 588 Antisense
GATTTACGCGATTCACTGTTAACGG 191 427 607 Antisense
ACCCTTTGAAGATACACCAGCCGAC 511 85 750 Antisense
GGAAACGCTTCAAACTACGCAGTAG 543 525 796 Antisense
Sequence Source Affymetrix Proprietary Database