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[179966_at]

Description F27D9.4 /REP_DB=WormBase Gene ID /WP=CE02701 /TR=Q19841 /GB=AAA93383.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 6.8
(-3)
A 		7.7
(-2.3)
A 		7.5
(-2.4)
A 		14.1
(3)
A 		7
B 10.6
(-2.6)
A 		36.8
(3)
A 		8.9
(-3)
A 		8.7
(-3)
A 		28
C 9.3
(-3)
A 		12.8
(-2.7)
A 		9.4
(-3)
A 		77.8
(3)
A 		69
avr 8.9
(-2.9) 		19.1
(-0.5) 		8.6
(-3) 		33.5
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 13
(2.2)
A 		4.7
(-2)
A 		2.7
(-3)
A 		14.5
(3)
A 		6.2
(-1.2)
A 		12.5
(2)
A 		12
B 40.3
(3)
A 		12.1
(-3)
A 		32.8
(1.4)
A 		17.8
(-1.8)
A 		24.1
(-0.4)
A 		26.3
(0)
A 		28
C 39.3
(3)
A 		7.7
(-2.4)
A 		4.2
(-3)
A 		16.6
(-0.9)
A 		31.2
(1.6)
A 		4.5
(-2.9)
A 		35
avr 30.9
(3) 		8.2
(-3) 		13.2
(-1.7) 		16.3
(-0.9) 		20.5
(0.3) 		14.4
(-1.4) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.5
(3)
A 		1.7
(-3)
A 		2
(-0.8)
A 		2.1
(0)
A 		1
B 3.4
(-1.8)
A 		9.1
(3)
A 		2.1
(-2.8)
A 		1.9
(-3)
A 		7
C 3.1
(-3)
A 		3.7
(-2.6)
A 		3.3
(-2.9)
A 		13.1
(3)
A 		10
avr 3
(-2.1) 		4.8
(1.3) 		2.5
(-3) 		5.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.4
(0.5)
A 		1.7
(-0.9)
A 		0.6
(-3)
A 		3.7
(3)
A 		1.9
(-0.5)
A 		3
(1.6)
A 		3
B 14
(3)
A 		4
(-3)
A 		8
(-0.6)
A 		4.7
(-2.6)
A 		9.8
(0.5)
A 		9.8
(0.5)
A 		10
C 14.6
(3)
A 		2.4
(-2.4)
A 		1.1
(-3)
A 		3.3
(-2)
A 		10.1
(1)
A 		1.5
(-2.8)
A 		14
avr 10.3
(3) 		2.7
(-3) 		3.2
(-2.6) 		3.9
(-2.1) 		7.3
(0.6) 		4.8
(-1.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179966_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16803
Sequence Type Exemplar sequence
Representative Public ID F27D9.4 NCBI
Target Description F27D9.4 /REP_DB=WormBase Gene ID /WP=CE02701 /TR=Q19841 /GB=AAA93383.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076891(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076891 NCBI Caenorhabditis elegans F27D9.4 (F27D9.4) mRNA, complete cds. 11/11 None
F27D9.4 ENSEMBL cdna:known chromosome:CEL140:X:7653074:7654364:-1 gene:F27D9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7653072-7654363(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F27D9.4
Entrez Gene 185018 Entrez gene
SwissProt Q19841 EMBL-EBI
WormBase CE02701 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93383 Hypothetical protein F27D9.4 [Caenorhabditis elegans] ref|NP_509292.1| F27D9.4 [Caenorhabditis elegans] 1.0E-77
Sequence
Target Sequence 
>C. ELEGANS:179966_AT
cactctatactcggtccttttcgagacttctcaatggtccctctgaatttgaagctgaat
gcttttccgcgctccttcatcaattcgtctcactcccccttgctgcctcaaaaatacgcg
tgcttttctaaaaacgccgtcgtttctctggcgctctctcttgcggaaaacacgactgac
cattcactcgagcctctgccgtctataattcaagagcgtaaatatgctctttcgacttgt
tcaaagttccattcgaaaacaaactttcgcacccttctcctctatgccctgcaacctgaa
aaggaggactctagcatttccgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTCTATACTCGGTCCTTTTCGAG 45 199 157 Antisense
TTTCGAGACTTCTCAATGGTCCCTC 248 669 175 Antisense
ATGGTCCCTCTGAATTTGAAGCTGA 281 51 190 Antisense
TGAAGCTGAATGCTTTTCCGCGCTC 685 573 206 Antisense
TGCTGCCTCAAAAATACGCGTGCTT 104 583 257 Antisense
GCGCTCTCTCTTGCGGAAAACACGA 161 289 307 Antisense
AAACACGACTGACCATTCACTCGAG 499 129 324 Antisense
AGCCTCTGCCGTCTATAATTCAAGA 685 83 347 Antisense
AAATATGCTCTTTCGACTTGTTCAA 40 117 376 Antisense
CCTCTATGCCCTGCAACCTGAAAAG 36 269 435 Antisense
AAAGGAGGACTCTAGCATTTCCGCT 557 117 456 Antisense
Sequence Source Affymetrix Proprietary Database