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[179965_at]

Description F32D1.8 /REP_DB=WormBase Gene ID /WP=CE09872 /TR=O16290 /GB=AAB65354.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 58.4
(3)
A 		15
(-3)
A 		38.5
(0.2)
A 		21.1
(-2.2)
A 		43
B 25.5
(-1.8)
A 		80.1
(3)
P 		12.4
(-3)
A 		58.8
(1.1)
A 		68
C 5.4
(-3)
A 		27.9
(2.3)
A 		19.5
(0.3)
A 		30.9
(3)
A 		26
avr 29.8
(-0.8) 		41
(3) 		23.5
(-3) 		36.9
(1.6) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 18.8
(-3)
A 		47
(1.1)
A 		25.2
(-2.1)
A 		20.5
(-2.8)
A 		36
(-0.5)
A 		60.5
(3)
A 		42
B 51.9
(3)
A 		51.1
(2.8)
A 		49.9
(2.6)
A 		23.9
(-2.4)
A 		38.4
(0.4)
A 		20.7
(-3)
A 		31
C 48
(-0.8)
A 		59.9
(0.3)
A 		90.1
(3)
A 		62.5
(0.5)
A 		42.9
(-1.2)
A 		23
(-3)
A 		67
avr 39.6
(-1.6) 		52.7
(2.3) 		55.1
(3) 		35.6
(-2.7) 		39.1
(-1.7) 		34.7
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 21.3
(3)
A 		3.3
(-2.9)
A 		10.1
(-0.7)
A 		3.1
(-3)
A 		18
B 8.1
(-1.2)
A 		19.8
(3)
P 		2.9
(-3)
A 		12.5
(0.4)
A 		17
C 1.8
(-3)
A 		8
(3)
A 		6.8
(1.8)
A 		5.2
(0.3)
A 		6
avr 10.4
(3) 		10.4
(3) 		6.6
(-3) 		6.9
(-2.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 3.5
(-3)
A 		16.7
(3)
A 		5.5
(-2.1)
A 		5.2
(-2.2)
A 		10.9
(0.4)
A 		14.7
(2.1)
A 		13
B 18.1
(3)
A 		17
(2.4)
A 		12.1
(-0.1)
A 		6.3
(-3)
A 		15.6
(1.7)
A 		7.7
(-2.3)
A 		12
C 17.8
(1)
A 		18.3
(1.2)
A 		22.9
(3)
A 		12.6
(-1.1)
A 		13.9
(-0.6)
A 		7.7
(-3)
A 		15
avr 13.1
(0.3) 		17.3
(3) 		13.5
(0.5) 		8
(-3) 		13.5
(0.5) 		10
(-1.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179965_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15206
Sequence Type Exemplar sequence
Representative Public ID F32D1.8 NCBI
Target Description F32D1.8 /REP_DB=WormBase Gene ID /WP=CE09872 /TR=O16290 /GB=AAB65354.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071805(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071805 NCBI Caenorhabditis elegans F32D1.8 (F32D1.8) mRNA, complete cds. 10/11 None
GENEFINDER00000007336 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4376511:4377536:-1 10/11 None
F32D1.8 ENSEMBL cdna:known chromosome:CEL140:V:4376433:4377536:-1 gene:F32D1.8 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4376432-4377536(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F32D1.8
Entrez Gene 185202 Entrez gene
SwissProt O16290 EMBL-EBI
WormBase CE35301 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65354 Hypothetical protein F32D1.8 [Caenorhabditis elegans] ref|NP_504206.2| F32D1.8 [Caenorhabditis elegans] 2.0E-45
blast AAB65354 Hypothetical protein F32D1.8 [Caenorhabditis elegans] ref|NP_504206.2| F32D1.8 [Caenorhabditis elegans] 3.0E-44
Sequence
Target Sequence 
>C. ELEGANS:179965_AT
gttgggctacctaataagcttgacccaggcttggctgaaaaaagtgtttgtcttcgtaac
taaaaccaacatcgccaagggagtcgatgcatcggaatacttttccgtcagcgaaatcag
cgaggagccgatgttgaaagagcccttcgacgagcaacacgacgatgagtactgggagca
ttacgccagaatccgccaggagcttctcagccgcgtgcttttccctattcgaagaggtaa
aactctcgaagaacaattttcagccgatagcgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGGCTACCTAATAAGCTTGACC 275 435 15 Antisense
TAAGCTTGACCCAGGCTTGGCTGAA 136 637 29 Antisense
CGTAACTAAAACCAACATCGCCAAG 687 239 69 Antisense
TCGCCAAGGGAGTCGATGCATCGGA 157 597 86 Antisense
GGAATACTTTTCCGTCAGCGAAATC 518 531 108 Antisense
GCGAAATCAGCGAGGAGCCGATGTT 409 289 125 Antisense
GTTGAAAGAGCCCTTCGACGAGCAA 652 437 147 Antisense
GCAACACGACGATGAGTACTGGGAG 88 317 168 Antisense
TGGGAGCATTACGCCAGAATCCGCC 692 553 187 Antisense
CGTGCTTTTCCCTATTCGAAGAGGT 636 245 228 Antisense
GAACAATTTTCAGCCGATAGCGACG 508 353 265 Antisense
Sequence Source Affymetrix Proprietary Database