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[179962_at]

Description K05F6.4 /REP_DB=WormBase Gene ID /WP=CE17162 /TR=O44862 /GB=AAB95024.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 42      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 5.8
(-3)
A 		44.5
(3)
A 		29.7
(0.7)
A 		36.3
(1.7)
A 		39
B 13.2
(-2.5)
A 		73.3
(3)
A 		23.7
(-1.6)
A 		8
(-3)
A 		65
C 15.9
(-1.9)
A 		48.6
(3)
A 		28.6
(0)
A 		8.5
(-3)
A 		40
avr 11.6
(-3) 		55.5
(3) 		27.3
(-0.9) 		17.6
(-2.2) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 27.9
(-1)
A 		17.2
(-2)
A 		10.6
(-2.6)
A 		5.9
(-3)
A 		8.1
(-2.8)
A 		70.8
(3)
A 		65
B 25.8
(-0.9)
A 		14.2
(-2.2)
A 		13.4
(-2.3)
A 		6.7
(-3)
A 		49
(1.6)
A 		61.6
(3)
A 		55
C 8.3
(-3)
A 		10.5
(-2.7)
A 		50.1
(1.8)
A 		15.3
(-2.2)
A 		29.2
(-0.6)
A 		60.6
(3)
A 		52
avr 20.7
(-1.8) 		14
(-2.5) 		24.7
(-1.3) 		9.3
(-3) 		28.8
(-0.9) 		64.3
(3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2.1
(-3)
A 		9.7
(3)
A 		7.8
(1.5)
A 		5.3
(-0.5)
A 		8
B 4.2
(-2.1)
A 		18.1
(3)
A 		5.5
(-1.6)
A 		1.7
(-3)
A 		16
C 5.3
(-1.1)
A 		14
(3)
A 		10
(1.1)
A 		1.4
(-3)
A 		13
avr 3.9
(-2.4) 		13.9
(3) 		7.8
(-0.3) 		2.8
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 5.1
(-1.6)
A 		6.1
(-1.2)
A 		2.3
(-2.7)
A 		1.5
(-3)
A 		2.5
(-2.6)
A 		17.2
(3)
A 		16
B 9
(-1)
A 		4.7
(-2.2)
A 		3.3
(-2.6)
A 		1.8
(-3)
A 		19.9
(2.1)
A 		23
(3)
A 		21
C 3.1
(-3)
A 		3.2
(-3)
A 		12.8
(0.4)
A 		3.1
(-3)
A 		9.4
(-0.8)
A 		20.3
(3)
A 		17
avr 5.7
(-1.8) 		4.7
(-2.1) 		6.1
(-1.7) 		2.1
(-3) 		10.6
(-0.2) 		20.2
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179962_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4637
Sequence Type Exemplar sequence
Representative Public ID K05F6.4 NCBI
Target Description K05F6.4 /REP_DB=WormBase Gene ID /WP=CE17162 /TR=O44862 /GB=AAB95024.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061591(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061591 NCBI Caenorhabditis elegans K05F6.4 (K05F6.4) mRNA, complete cds. 11/11 None
SNAP00000019315 ENSEMBL cdna:SNAP chromosome:CEL140:II:1545931:1546997:1 11/11 None
GENEFINDER00000019336 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1540975:1546997:1 11/11 None
K05F6.4 ENSEMBL cdna:known chromosome:CEL140:II:1543506:1546997:1 gene:K05F6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1543504-1546996(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K05F6.4
Entrez Gene 187034 Entrez gene
SwissProt O44862 EMBL-EBI
WormBase CE17162 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95024 Hypothetical protein K05F6.4 [Caenorhabditis elegans] ref|NP_493992.1| K05F6.4 [Caenorhabditis elegans] 0.0
blast AAB95025 Hypothetical protein K05F6.5 [Caenorhabditis elegans] ref|NP_493991.1| K05F6.5 [Caenorhabditis elegans] 0.0
blast AAK85465 Hypothetical protein E01A2.8 [Caenorhabditis elegans] ref|NP_491307.1| E01A2.8 [Caenorhabditis elegans] 0.0
blast AAB95029 Hypothetical protein K05F6.1 [Caenorhabditis elegans] ref|NP_493998.1| K05F6.1 [Caenorhabditis elegans] 6.0E-86
blast AAB95027 Hypothetical protein K05F6.7 [Caenorhabditis elegans] ref|NP_493995.1| K05F6.7 [Caenorhabditis elegans] 8.0E-56
blast AAB95027 Hypothetical protein K05F6.7 [Caenorhabditis elegans] ref|NP_493995.1| K05F6.7 [Caenorhabditis elegans] 2.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.8E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.3E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.3E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.3E-7
Pfam IPR002640 EMBL-EBI Arylesterase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493992.1 1 5-27
K05F6.4 1 5-27
SNAP00000019315 1 7-29
GENEFINDER00000019336 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:179962_AT
aaatcacatcaccaaactctttaccacatttacaccaatcaatgactttacattacatca
aaatgtttcacaactgttaaactcctctcaactctcacaactacgaccaatattgtcaca
ggagtttcaaagaatatccgtgaaagccgatttatcgctgaatgagctacttctcacaga
aggcccattcatcaaaattaccagcgcacttttaacaaataaggaaatcaatgtgttctt
gaaacattggatggacggtttgaaaccagagctcaaatatctctgtctccgaaatgaccg
taccgattgtgtcttcaatccgaccgctattcttgaaggaattccccacgagcttgcccc
gagtgaaaggaggttttgtatgcgtgatctgggactcaagttcggaggaatcgatattca
cctgacccaaggaatcaaagcaactatcgtgttctttaactcccttacctcaggaatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCACATCACCAAACTCTTTACC 246 117 1521 Antisense
AACTCTTTACCACATTTACACCAAT 258 1 1535 Antisense
ACAACTGTTAAACTCCTCTCAACTC 441 113 1590 Antisense
TCAACTCTCACAACTACGACCAATA 388 631 1608 Antisense
TTCTCACAGAAGGCCCATTCATCAA 699 691 1691 Antisense
ATCTCTGTCTCCGAAATGACCGTAC 132 33 1799 Antisense
ATGACCGTACCGATTGTGTCTTCAA 519 43 1814 Antisense
CAATCCGACCGCTATTCTTGAAGGA 223 179 1836 Antisense
GCGTGATCTGGGACTCAAGTTCGGA 52 293 1902 Antisense
GCAACTATCGTGTTCTTTAACTCCC 464 319 1960 Antisense
TTAACTCCCTTACCTCAGGAATTTG 645 683 1976 Antisense
Sequence Source Affymetrix Proprietary Database