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[179960_at]

Description C07G1.6 /REP_DB=WormBase Gene ID /WP=CE06782 /TR=Q17798 /GB=AAB00660.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 5.4
(-2.7)
A 		4
(-3)
A 		7.3
(-2.2)
A 		29
(3)
A 		25
B 3.3
(-3)
A 		8.9
(2.4)
A 		6.3
(-0.1)
A 		9.5
(3)
A 		6
C 4.1
(-3)
A 		22.4
(0.3)
A 		7.2
(-2.4)
A 		37
(3)
A 		33
avr 4.3
(-3) 		11.8
(-0.8) 		6.9
(-2.3) 		25.2
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 9.3
(-3)
A 		15.6
(-2.7)
A 		20.4
(-2.5)
A 		20.8
(-2.5)
A 		100.7
(1.2)
P 		139.4
(3)
P 		130
B 20.9
(-2.1)
A 		9.2
(-2.9)
A 		25.6
(-1.8)
A 		7.1
(-3)
A 		98.9
(3)
P 		82.9
(2)
P 		92
C 7.3
(-2.8)
A 		22.7
(-1.7)
A 		3.6
(-3)
A 		49.3
(0)
A 		79.8
(2)
P 		94.2
(3)
P 		91
avr 12.5
(-3) 		15.8
(-2.8) 		16.5
(-2.7) 		25.7
(-2.1) 		93.1
(2.2) 		105.5
(3) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2
(-1)
A 		0.9
(-3)
A 		1.9
(-1.2)
A 		4.2
(3)
A 		3
B 1
(-3)
A 		2.2
(3)
A 		1.5
(-0.5)
A 		2
(2)
A 		1
C 1.4
(-3)
A 		6.5
(3)
A 		2.5
(-1.7)
A 		6.2
(2.6)
A 		5
avr 1.5
(-3) 		3.2
(0.9) 		2
(-1.8) 		4.1
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 1.7
(-3)
A 		5.5
(-2.3)
A 		4.4
(-2.5)
A 		5.3
(-2.3)
A 		30.4
(2.3)
P 		33.9
(3)
P 		32
B 7.3
(-2.2)
A 		3.1
(-2.8)
A 		6.2
(-2.3)
A 		1.9
(-3)
A 		40.2
(3)
P 		30.9
(1.5)
P 		38
C 2.7
(-2.6)
A 		6.9
(-1.8)
A 		0.9
(-3)
A 		9.9
(-1.2)
A 		25.8
(1.9)
P 		31.5
(3)
P 		31
avr 3.9
(-3) 		5.2
(-2.7) 		3.8
(-3) 		5.7
(-2.6) 		32.1
(3) 		32.1
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179960_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9519
Sequence Type Exemplar sequence
Representative Public ID C07G1.6 NCBI
Target Description C07G1.6 /REP_DB=WormBase Gene ID /WP=CE06782 /TR=Q17798 /GB=AAB00660.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068976(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068976 NCBI Caenorhabditis elegans C07G1.6 (C07G1.6) mRNA, complete cds. 11/11 None
SNAP00000020465 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8209207:8210070:-1 11/11 None
GENEFINDER00000020479 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8209207:8210328:-1 11/11 None
C07G1.6 ENSEMBL cdna:known chromosome:CEL140:IV:8209207:8209771:-1 gene:C07G1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8209212-8209777(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07G1.6
Entrez Gene 182377 Entrez gene
SwissProt Q17798 EMBL-EBI
WormBase CE06782 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00660 Hypothetical protein C07G1.6 [Caenorhabditis elegans] ref|NP_501377.1| C07G1.6 [Caenorhabditis elegans] 4.0E-63
blast AAB00660 Hypothetical protein C07G1.6 [Caenorhabditis elegans] ref|NP_501377.1| C07G1.6 [Caenorhabditis elegans] 1.0E-62
blast CAE58435 Hypothetical protein CBG01570 [Caenorhabditis briggsae] 9.0E-48
blast CAE58435 Hypothetical protein CBG01570 [Caenorhabditis briggsae] 1.0E-46
blast CAE58435 Hypothetical protein CBG01570 [Caenorhabditis briggsae] 7.0E-29
Sequence
Target Sequence 
>C. ELEGANS:179960_AT
atggcaataactcgcgaatcaaaaaatggagaagaatttgttggtgaggtcacattctac
gaaggtgtcaatatgaatgttgttgttaatttctttacgggactcgatcattacgaatat
gctaaactccgattcgcccatactgctcacacgccacctctaatccgagcatcttctaca
tctgcgtctgcatcagcctccacctctacctcttcatcaaggccgaagaagcattatttg
gaaaagaatatggagcacttattaaagaaacttgacattcttgcattcaaacagacgatt
atcgaatcgagaagccctacatctgacagtattcaccatcaagattttgtttcaaacact
gataccgccgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCAATAACTCGCGAATCAAAAA 82 53 13 Antisense
TGGTGAGGTCACATTCTACGAAGGT 35 551 54 Antisense
TTCTTTACGGGACTCGATCATTACG 467 675 103 Antisense
GAATATGCTAAACTCCGATTCGCCC 361 325 127 Antisense
CTAATCCGAGCATCTTCTACATCTG 54 227 172 Antisense
CTCTACCTCTTCATCAAGGCCGAAG 506 229 216 Antisense
GAAACTTGACATTCTTGCATTCAAA 216 357 279 Antisense
TTATCGAATCGAGAAGCCCTACATC 520 673 311 Antisense
AGAAGCCCTACATCTGACAGTATTC 86 75 322 Antisense
GACAGTATTCACCATCAAGATTTTG 28 369 337 Antisense
TGTTTCAAACACTGATACCGCCGAA 678 559 360 Antisense
Sequence Source Affymetrix Proprietary Database